Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco02g0889 | ATGTCCCTCCGATTCGGTTCCCATCTTGTTGTAGTTGTTTCGTCTCCTTCTGCCGTGAAAGAATGCTTTACAAAGAACGATATCATTCTTGCAAATCGGCCTTTGTTGAACACTACAAAGTACTTAGCATACAACCAAACCACTATGGGGGTCTCCCCTTACGGTGAACATTGGCGAAATCTCCGTCGAATCGGCTCGCTCGAGATTTTCTCAACAAATCGCCTCAATTTCTTCTTGGGAATTCGGGAAGATGAAGTTAAACGTTTGCTATGTAAATTATGTGGTAATTGTTATAAGTTGGACGATGAGTTTAGAGTAGTGGAATTGGAGCCTATGTTGCAAGATCTTACATTGAATATTGTTATGAGAATGGTGTGTGGGAAGAAGTTTTATGAAGAAGATTATTCTAGCAAGTTTAGAGATATTGTGACACAAATTCTGGCACATGGTGGGGCCACAAATCCAGGAGACTTCATACCCTTATGGAATTGGATTGATCCAACTGGTTTTATGAAGAGGGTAAAGAAGATTGCAAAGACATCAGATGAATTTCTTCAACAGTTAATTGATGAGATTAGGAACCAAAATGATGGAGGGGACACTATGATTCACCATTTACTTAGTTTGCAGAATATTGAACCTCAATATTACAACGATCAAACTATCAAAGGACTCATTCAAGATATATTTTTAGCTGGGATAGACACGTTAGCTTTGACTTTGGAGTGGGCACTATCTCACTTGCTCAACAATCCAGACGTGTTAAAGAAGGCAAAAGTTGAGATAGATTGTTGGATTGGGCAAGAACGTGTAGTTAATGAAGCTGATCTACCAAGTTTGAGTTACCTTCAAGGAATAATCACCGAGACTTTGCGTCTTAACCCACCTGCTCCTCTGCTTGTGCCACACTGTGCATTATTTGAAGAGTGCAAAATAGAAGGATATGATGTTCCACGTGATACAATTATATTGATTAATGCTTGGGCTATCCATAGAGATCCAAGTCTTTGGGAAGATGCAACCAGCTTTAAACCTGAAAGACATGCAAGTGGGATTGAAGCTTCAGAGTCATATAAACTAATACCATTTGGAGTGGGGAGGAGAGCATGTCCTGGTGTGGGAATGGCGCAACGTACACTTGCCTTGACTTTAGCGTCGTTGATACAAAGCTTTGAATGGGAAAGAGTTAACGACTCATTGATTGATATGAGTGAAGGTAAAGGGCTCACAATGCCCAAAGCTCAACCATTGGTAGCTAAGTGTAAACCATGCCCAATCGTGAAAGCCATCCTGAAAGCACGTACCAATTGCTAA | 1314 | 40.56 | MSLRFGSHLVVVVSSPSAVKECFTKNDIILANRPLLNTTKYLAYNQTTMGVSPYGEHWRNLRRIGSLEIFSTNRLNFFLGIREDEVKRLLCKLCGNCYKLDDEFRVVELEPMLQDLTLNIVMRMVCGKKFYEEDYSSKFRDIVTQILAHGGATNPGDFIPLWNWIDPTGFMKRVKKIAKTSDEFLQQLIDEIRNQNDGGDTMIHHLLSLQNIEPQYYNDQTIKGLIQDIFLAGIDTLALTLEWALSHLLNNPDVLKKAKVEIDCWIGQERVVNEADLPSLSYLQGIITETLRLNPPAPLLVPHCALFEECKIEGYDVPRDTIILINAWAIHRDPSLWEDATSFKPERHASGIEASESYKLIPFGVGRRACPGVGMAQRTLALTLASLIQSFEWERVNDSLIDMSEGKGLTMPKAQPLVAKCKPCPIVKAILKARTNC | 437 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 10677110 | 10679582 | - | CcPI632755_02g008890.1 | Cco02g0889 | 171646 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco02g0889 | 437 | PRINTS | E-class P450 group I signature | 221 | 238 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0889 | 437 | PRINTS | E-class P450 group I signature | 360 | 370 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0889 | 437 | PRINTS | E-class P450 group I signature | 326 | 350 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0889 | 437 | PRINTS | E-class P450 group I signature | 18 | 39 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0889 | 437 | PRINTS | E-class P450 group I signature | 116 | 134 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0889 | 437 | PRINTS | E-class P450 group I signature | 241 | 267 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0889 | 437 | PRINTS | E-class P450 group I signature | 370 | 393 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0889 | 437 | PRINTS | E-class P450 group I signature | 284 | 302 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0889 | 437 | PRINTS | P450 superfamily signature | 361 | 370 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0889 | 437 | PRINTS | P450 superfamily signature | 232 | 249 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0889 | 437 | PRINTS | P450 superfamily signature | 285 | 296 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0889 | 437 | PRINTS | P450 superfamily signature | 370 | 381 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0889 | 437 | PANTHER | CYTOCHROME P450 82C3-RELATED | 2 | 423 | IPR050651 | - | |
| Cco02g0889 | 437 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 363 | 372 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco02g0889 | 437 | SUPERFAMILY | Cytochrome P450 | 2 | 423 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0889 | 437 | CDD | CYP81 | 1 | 417 | - | - | |
| Cco02g0889 | 437 | Pfam | Cytochrome P450 | 2 | 414 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0889 | 437 | Gene3D | Cytochrome P450 | 1 | 424 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0889 | 437 | FunFam | Cytochrome P450 82C4 | 1 | 422 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g0889 | Cco-Chr2:10677110 | Cco02g0892 | Cco-Chr2:10742102 | 5.40E-164 | dispersed | |
| Cco02g0886 | Cco-Chr2:10652500 | Cco02g0889 | Cco-Chr2:10677110 | 7.90E-175 | proximal | |
| Cco02g0889 | Cco-Chr2:10677110 | Cco02g0890 | Cco-Chr2:10719186 | 4.90E-173 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco02g0889 | K13260 | - | csv:101205626 | 626.706 |