Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco02g0890 | ATGGATCTTCTTTTGCTCTCTATTTCTCTAATCTCTCTATTCTCTCTTCTCCTTGCCTTCAACTTCTTCCAGCAACCTCCTCACAAAAACCTCCCACCAACTCCATCTTTTTCTCTTCCATTAATAGGCCATCTCCATCTCCTCAAACATCCTGTCCATCAAACACTTCAAAGCCTCTCCCAAAAGCATGGCCATGTCTTTTGTCTTCGATTCGGCTCACGTCTTGTCGTAGTTGTATCCTCTTCTTCTCTTGTCCAAGAATGCTTTACAAAGAACGATGTGATTCTTGCCAATCGCCCATTGTTCAAGAGTTCGAAGTACTTAACCTACAACTATACCAACTTAGCCATCGCTCCTTATGGAGAACATTGGCGAAACCTCCGCCGAATCAGCACCCTTGAGATTTTCTCTGCAAGTCGCCTTAATCTTTTCAGGGAAATTAGGGAAGATGAAGTCAAACGGTTGTTGTGTAAATTGTGGGATAAGAATTCGTTTGAAGAGTTTAAGGTAGTGGAGATGGGGCCAATATTTATGGATCTTATGTTCAATATTGTTATGAGAATGATGGCGGGAAAGAAGTATTGTGGTGATGATTTGGAAGATGAGGAAAGATCCAAGAAATTTAAAGAGATGGTGACACAAGTTCTTGCAATTAGTGCAATGGGAAATCCAGGAGATGTTATACCTTTATGGAATTGGATTGATCCAACTTGTTATGAGAAAAGGGTAAAAAAGCTTGCAAAGACATCAGATGAACTTCTTCAACAACTAATTGATGAGATTAGGAATCAAAATGATGGAGAAAACACCATGATTCAACATTTACTTGGTTTGCAGAATACCCAACCTGAATGTTATAGTGATGAAATTATCAAAGGCCTCATACAAGTAGTATTTTTGGCAGGAATAGACACAATTGCAGTGACCTTAGAATGGGCACTATCTCAATTGCTCAATAATTCAGAGGTGTTGAAGAAAGCTAGAGATGAGATAGATAGTTCCATTGGGCAAGATCGTTTTGTTAACGAAGCTGATTTGTCGAGTTTGAGTTACTTGGAAGGAATAATCTCTGAGACCCTACGATTGAACCCAGCCGCTCCCCTTCTGCTGCCACATTGTGCCTCTCAAGACTGCAAAATAGGAGGCTACGATGTACCACGTGACACGATGGTATTAATCAATGCTTGGGCCATACACACAGACTCAAGTCTATGGGAAGATGCCAAAAGTTTCAAGCCTGAAAGACATGACAATGCAATTGGAGTTGATTTGTACAAACTATTACCATTTGGGTTGGGAAGGAGAGCTTGCCCTGGAATGGGAATGGCACAACGTGTAATTGCATTGACTCTGGCGTCGTTGATTCAATGCTTTGAGTGGCAAAGACTCAGCAACTCATTGGTGGACATGACAGAAGGCCAAGGACTCACTATGCCGAAAGCTCAACCATTGACAGCCAAGTGTAGACCTCGTTCAGTCATGAAAAAACTATTGCCAAGGAAACAATAA | 1509 | 41.22 | MDLLLLSISLISLFSLLLAFNFFQQPPHKNLPPTPSFSLPLIGHLHLLKHPVHQTLQSLSQKHGHVFCLRFGSRLVVVVSSSSLVQECFTKNDVILANRPLFKSSKYLTYNYTNLAIAPYGEHWRNLRRISTLEIFSASRLNLFREIREDEVKRLLCKLWDKNSFEEFKVVEMGPIFMDLMFNIVMRMMAGKKYCGDDLEDEERSKKFKEMVTQVLAISAMGNPGDVIPLWNWIDPTCYEKRVKKLAKTSDELLQQLIDEIRNQNDGENTMIQHLLGLQNTQPECYSDEIIKGLIQVVFLAGIDTIAVTLEWALSQLLNNSEVLKKARDEIDSSIGQDRFVNEADLSSLSYLEGIISETLRLNPAAPLLLPHCASQDCKIGGYDVPRDTMVLINAWAIHTDSSLWEDAKSFKPERHDNAIGVDLYKLLPFGLGRRACPGMGMAQRVIALTLASLIQCFEWQRLSNSLVDMTEGQGLTMPKAQPLTAKCRPRSVMKKLLPRKQ | 502 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 10719186 | 10721334 | + | CcPI632755_02g008900.1 | Cco02g0890 | 171647 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco02g0890 | 502 | PRINTS | E-class P450 group I signature | 84 | 105 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0890 | 502 | PRINTS | E-class P450 group I signature | 180 | 198 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0890 | 502 | PRINTS | E-class P450 group I signature | 427 | 437 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0890 | 502 | PRINTS | E-class P450 group I signature | 437 | 460 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0890 | 502 | PRINTS | E-class P450 group I signature | 310 | 336 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0890 | 502 | PRINTS | E-class P450 group I signature | 290 | 307 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0890 | 502 | PRINTS | E-class P450 group I signature | 353 | 371 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0890 | 502 | PRINTS | E-class P450 group I signature | 60 | 79 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0890 | 502 | PRINTS | E-class P450 group I signature | 394 | 418 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0890 | 502 | PANTHER | CYTOCHROME P450 82C3-RELATED | 15 | 491 | IPR050651 | - | |
| Cco02g0890 | 502 | PRINTS | P450 superfamily signature | 428 | 437 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0890 | 502 | PRINTS | P450 superfamily signature | 354 | 365 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0890 | 502 | PRINTS | P450 superfamily signature | 437 | 448 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0890 | 502 | PRINTS | P450 superfamily signature | 301 | 318 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0890 | 502 | CDD | CYP81 | 64 | 484 | - | - | |
| Cco02g0890 | 502 | Gene3D | Cytochrome P450 | 25 | 499 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0890 | 502 | FunFam | Cytochrome P450 family protein | 23 | 494 | - | - | |
| Cco02g0890 | 502 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 430 | 439 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco02g0890 | 502 | SUPERFAMILY | Cytochrome P450 | 32 | 491 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0890 | 502 | Pfam | Cytochrome P450 | 32 | 480 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g0882 | Cco-Chr2:10591389 | Cco02g0890 | Cco-Chr2:10719186 | 4.70E-137 | dispersed | |
| Cco02g0886 | Cco-Chr2:10652500 | Cco02g0890 | Cco-Chr2:10719186 | 6.70E-190 | dispersed | |
| Cco02g0890 | Cco-Chr2:10719186 | Cco04g1470 | Cco-Chr4:30145027 | 3.70E-164 | dispersed | |
| Cco02g0890 | Cco-Chr2:10719186 | Cco02g0892 | Cco-Chr2:10742102 | 3.20E-176 | proximal | |
| Cco02g0889 | Cco-Chr2:10677110 | Cco02g0890 | Cco-Chr2:10719186 | 4.90E-173 | tandem | |
| Cco02g0890 | Cco-Chr2:10719186 | Cco05g2861 | Cco-Chr5:36227444 | 3.00E-42 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco02g0890 | K13260 | - | csv:101205391 | 823.157 |