Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco02g0892 | ATGGATTTCAATATCTTGCTTTACATTTTGCTCTCTCTTGTCTGTCTTCTACTTGGCTACTCCTTTTTACTTAAACCTAATCGCTTAAACCTCCCACAAACTCCACTCTTTTGCCTTCCATTTGTAGGCCATCTCCATCTTCTCAAACATCCTGTCCACAAAACATTTCAAAATCTCTTTCAAAAGTATGGTCATGTCTTCTCTCTCAAATTCGGTTCCCGTCTCGTCGTACTCGTATCTTCTCCTTCTGCCGTCCAAGAATGTTTTACAAAGAATGATATCATTCTTGCAAATCGACCATCTTTGAACGCTGGAAAGTACTTAGCATACAATAATACCACTATGGCAGTCTCCCCTTATAGTGAACATTGGCGAAACCTTCGCCGAATTAGCACCCTCGAAATTTTCTCAACAACTCGACTTAATTCTTTTTCGAGAATTCGAGAAGATGAAGTCAAACGATTTCTACGTGGAATGAAGTTTTGTGAAGAGAAGAATAATACTTTGTCAGAGGATGAAGGATATTCTAAAAGATTTAGAGAGTTGGTGACACAAATTATGGCACATAGTGGGTCAACAAATCCAGGGGATTTCATACCCTTATGGAATTGGATTGATCCTACTGGTTTTAATAAAAGGATAATGCAACTTGGAAGAAGATCAGATGAACTTCTTCAAGGATTAGTTGATGAGATTAGGAGTCAAGAAGATGAAGGAAACACTATGATTCACCATTTACTTCGCTTACAAAACACTGATCCTGAATATTATAATGACATGGTTATCAAAGGTCTCATACAAGATATATTAATAGCAGGGATTGACTCAACAGCTGTGACATTACAATGGGCACTATCTCATTTACTTAACAATCCAATCGCGTTAGAGAAAGCCACGACTGAGATGGATCTTCTTGTTGGACAAGAACGTGCGGTGAATGAAGTTGATTTATCGAATTTAAGGTACCTGCAAGGAATAATCTCTGAGACTCTACGGCTAAGTCCGGCTGGTCCTTTGCTTGTACCACATTGTGCATCCGAAGACTGCAAAATAGGAGGTTATGATATTCCACGTAATACTATTGTATTGGTCAATGTTTGGGCTATACATAGAGATCCAAATTTATGGGAAGATGCCACCAGTTTTAGGCCTGAAAGACATGCAAATGTGGCTGAATTTGAGTACTCATACAAACTATTACCATTTGGTTTGGGGAGAAGAGCATGCCCTGGCATGGCTATGGCGCAGCGCGTGGTTGGCTTGACTTTGGCATCGTTGGTTCAATGTTTTGAGTGGAAAAGAGCAAGCACGTCGTTGGTTGATATGAGAGAGGGTCAAGGGCTCACAATGCCCAAAGTTGAGCCATTAGTAGCCAAGTGTAGACCGCGCTCGATCATGAAAGCGGTTCTCAGCGAAACAATTGGCTAA | 1428 | 40.41 | MDFNILLYILLSLVCLLLGYSFLLKPNRLNLPQTPLFCLPFVGHLHLLKHPVHKTFQNLFQKYGHVFSLKFGSRLVVLVSSPSAVQECFTKNDIILANRPSLNAGKYLAYNNTTMAVSPYSEHWRNLRRISTLEIFSTTRLNSFSRIREDEVKRFLRGMKFCEEKNNTLSEDEGYSKRFRELVTQIMAHSGSTNPGDFIPLWNWIDPTGFNKRIMQLGRRSDELLQGLVDEIRSQEDEGNTMIHHLLRLQNTDPEYYNDMVIKGLIQDILIAGIDSTAVTLQWALSHLLNNPIALEKATTEMDLLVGQERAVNEVDLSNLRYLQGIISETLRLSPAGPLLVPHCASEDCKIGGYDIPRNTIVLVNVWAIHRDPNLWEDATSFRPERHANVAEFEYSYKLLPFGLGRRACPGMAMAQRVVGLTLASLVQCFEWKRASTSLVDMREGQGLTMPKVEPLVAKCRPRSIMKAVLSETIG | 475 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 10742102 | 10745802 | + | CcPI632755_02g008920.1 | Cco02g0892 | 171649 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco02g0892 | 475 | PRINTS | E-class P450 group I signature | 281 | 307 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0892 | 475 | PRINTS | E-class P450 group I signature | 409 | 432 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0892 | 475 | PRINTS | E-class P450 group I signature | 261 | 278 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0892 | 475 | PRINTS | E-class P450 group I signature | 365 | 389 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0892 | 475 | PRINTS | E-class P450 group I signature | 399 | 409 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0892 | 475 | PRINTS | E-class P450 group I signature | 60 | 79 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0892 | 475 | PRINTS | E-class P450 group I signature | 324 | 342 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0892 | 475 | PRINTS | E-class P450 group I signature | 84 | 105 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0892 | 475 | PRINTS | P450 superfamily signature | 325 | 336 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0892 | 475 | PRINTS | P450 superfamily signature | 272 | 289 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0892 | 475 | PRINTS | P450 superfamily signature | 409 | 420 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0892 | 475 | PRINTS | P450 superfamily signature | 400 | 409 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0892 | 475 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 402 | 411 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco02g0892 | 475 | Pfam | Cytochrome P450 | 171 | 453 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0892 | 475 | Pfam | Cytochrome P450 | 35 | 160 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0892 | 475 | SUPERFAMILY | Cytochrome P450 | 37 | 463 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0892 | 475 | CDD | CYP81 | 64 | 456 | - | - | |
| Cco02g0892 | 475 | Gene3D | Cytochrome P450 | 24 | 466 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0892 | 475 | PANTHER | CYTOCHROME P450 82C3-RELATED | 17 | 463 | IPR050651 | - | |
| Cco02g0892 | 475 | FunFam | Cytochrome P450 82C4 | 159 | 461 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g0889 | Cco-Chr2:10677110 | Cco02g0892 | Cco-Chr2:10742102 | 5.40E-164 | dispersed | |
| Cco02g0892 | Cco-Chr2:10742102 | Cco04g1470 | Cco-Chr4:30145027 | 5.40E-149 | dispersed | |
| Cco02g0890 | Cco-Chr2:10719186 | Cco02g0892 | Cco-Chr2:10742102 | 3.20E-176 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco02g0892 | K13260 | - | csv:101205626 | 775.007 |