Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0897 ATGGTGATTCAGAGAGAAATGGAATTGAGAAGAGCTGGTTATGTGGTTGTTTTTGTGACTCTCCTTTGTGCATTGGCAATTGCCAGTTCAGAGGGCAGAAGGAAGACGGTCGAAATGGTTCTTGCCAATTCCGCCAATTGCCACTTCACATCCTCAAAGTTGGATTCAGATATGGGCCAGAAAGCATGCATGAGAGAATTAGCAGAGAAGGAATATGAAGCAGAAGAATTCGTTCCTTGCATCCATAAAAAAAACATGGGTAAAGAAGCTATAAGAATTCTTCCAACTGACATGAAACATGACTTGTTGGATTGTTTAAGAAAGAAAACTATGCTTACTCGTGGTTCTGAACCAAGTTCTAGCTTATTTGATCGGTTTAGCAAACCAATAGAGTTGTTCTTCAGTGGAGGGTCCAATAGTCGCATGAGACATCTAATTAGAGCATCACAAGATTCATCAGAACCACACCTTGCTGAAGCTCCAGCTCCATCTCCATCTCCATCTCCATCTCCTGAAGCAGAATCACCAGCAAGTTCTCCATTCCCGTCTCCCAGTCTTGCTCCAACGCCATCTCCAAGTTATGCCCCAACCAAGTCACCATATCGAAATCTCCGTCCACCTGTTGAGGCTCCAGCTCCGTCTCCAGAACCACTACCAGACGACACTGATGTTTCGGATTTGCCTACATCTTCTGTAGTTCGCTCACCACCTCCTCCACGTGCTTCTCCCAAGTCTCGCCCTCCAAAGAAGCATGAAGAAGACCAGACAGCCGTAATTGCTGGTATTGTAGCAGCTGGTGTGGGAGTTGTTCTTGTGGTTGCTCTGCTTTTGTTTTGCTGTCGTAGAGGTGAGAAAAGTAAGGTAGATCCGAAGGATGGGCAAAAGGATGAGAGACCTCTCCTAAACATATCTTTGAGTGAATTATCAGCAGGTTCTTCACAGATGTCATACAGCCTTGGAAATCCAGCTACCAAAGAGGTAAATGCTGATAATGGAACTAAACCACCCTCATTTGTTGGCAACTTATCAGTGAATCCTGAAAATGATACCTCTATGGCTGAGGGTCCAACATCTGATGGTAAATCATCAGCAATGCCGCCTCTAAAACCCCCTCCTGGAAGAACAGATTCTCAACCTCCTCCAGCACCAGCACCAGAACCAGCACCAGAAGCAGCACCAGCACCAGTGGCAGCACCAGCACCACCTCCGCCGCCTGCTCCTAGAGCCCCACCACCACCACCCCTGAAAGTTGGCCGACCCCCACCTGCACCACCGACGGCAATCCCTGGTAAATCTCAAGCAGCGCCTATGGGGCCACATCAACGTGGACCCAGTGGCTCAAGTATGGATGGGGATTCAGGAGGCCAAAAGACCAAGTTAAAGCCCTTTTTCTGGGATAAGGTTCTCGCTAACCCTGGGCAATCCATGGTCTGGCACGAGATTAGTGCTGGATCATTCCAGTTCAATGAGGAGATGATGGAGTCCTTGTTTGGATATACAGCAGTAGAAACCAACAAAGGCGACCGCAAGAAAGATTTAGCTTCAGACCCTTCAGCACAGTTCATCCAAATCATCGATGCTAAGAAGGCTCAAAACCTTTCAATTCTCCTACGAGCATTGAATGTAACAACAGCAGAAGTTTTGGATGCCCTTGAAGAAGGAAATCCTGATCTTCCAGCAGAGCTTCTGCAGACCTTGTTGAAGATGGCACCAACAACAGAAGAGGAACTGAAACTGAGATTATTTTCAGGGGATCTTTCTCAGCTAGGTCCAGCAGAGCGATTCCTCAAAGTGTTGGTGGATGTTCCTTTTGCTTTTAAACGATTAGAGTGTCTTCTCTTCATGCTTTCAATGTCGGAAGACGTCACTAACATTAAGGAGTCATTCGCTACTCTAGAGGTCGCATGCAACACTCTTAGAAATAGCAGGCTGTTTCTCAAGCTATTAGAAGCAGTTCTCAAAACTGGAAATCGAATGAACGACGGGACGTACCGTGGCGGTGCTCAGGCATTCAAGCTCGATACGCTTTTGAAACTAGCGGATGTTAAAGGAACCGATGGCAAGACTACACTCTTACACTTTGTCGTACAGGAGATTATTCGTTCGGAGGGCATCCGAGCAGCCCGCTCCGACAGACAAAGCCGGAGTTCGTCCAGCATAATCTCCAGCGATACGATTTTCGAGGACTTCACCGACGATTCGACGGAACATTATCGGCAATTAGGGCTTCAGGTGGTTTCTAGTTTAAGCACGGAGCTCCAGGACGTTAAAAGAGCGGCTGCCATAGATGCGGAGGGGCTAACGACGACGATATCGAAACTTGGCCAGTCTCTGTTTAAAACCAAAGCATTTATAGACGCGGAGATGAAGAGTTTAGACGAAGACAGCAAATTCCACCAATCGTTGTCGAAATTTTTGGAAGGAGCGGAAGCAGATATTTCGTGGATTGCAGTGGAAGAAAAGAAGATAATGGCATTGGTGAGGAGCACGGTGGATTACTTCCATGGACATTCTGGAAAGGAGGAAGGATTGAGATTGTTTACGATCGTACGCGATTTCTTGATTGTGTTGGACAAGACATGTAAACAGGTCAAAGAAGCAGCTGAGGCTGCGGCCAAGCAAGCGAAGAATTCCAAAAAAGAAACTGCGACATCGTCGGCTACTTACAAGCAGAATTCAGATCTACGGCAGCGGCTATTTCCGGCAATTGCAGAACGACGGATAGGCGATGATTCAAGTTCTTCGGACGAGGACGACGATGGCGAGAGTTCATCTTCATCATCCTAG 2787 47.08 MVIQREMELRRAGYVVVFVTLLCALAIASSEGRRKTVEMVLANSANCHFTSSKLDSDMGQKACMRELAEKEYEAEEFVPCIHKKNMGKEAIRILPTDMKHDLLDCLRKKTMLTRGSEPSSSLFDRFSKPIELFFSGGSNSRMRHLIRASQDSSEPHLAEAPAPSPSPSPSPEAESPASSPFPSPSLAPTPSPSYAPTKSPYRNLRPPVEAPAPSPEPLPDDTDVSDLPTSSVVRSPPPPRASPKSRPPKKHEEDQTAVIAGIVAAGVGVVLVVALLLFCCRRGEKSKVDPKDGQKDERPLLNISLSELSAGSSQMSYSLGNPATKEVNADNGTKPPSFVGNLSVNPENDTSMAEGPTSDGKSSAMPPLKPPPGRTDSQPPPAPAPEPAPEAAPAPVAAPAPPPPPAPRAPPPPPLKVGRPPPAPPTAIPGKSQAAPMGPHQRGPSGSSMDGDSGGQKTKLKPFFWDKVLANPGQSMVWHEISAGSFQFNEEMMESLFGYTAVETNKGDRKKDLASDPSAQFIQIIDAKKAQNLSILLRALNVTTAEVLDALEEGNPDLPAELLQTLLKMAPTTEEELKLRLFSGDLSQLGPAERFLKVLVDVPFAFKRLECLLFMLSMSEDVTNIKESFATLEVACNTLRNSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAARSDRQSRSSSSIISSDTIFEDFTDDSTEHYRQLGLQVVSSLSTELQDVKRAAAIDAEGLTTTISKLGQSLFKTKAFIDAEMKSLDEDSKFHQSLSKFLEGAEADISWIAVEEKKIMALVRSTVDYFHGHSGKEEGLRLFTIVRDFLIVLDKTCKQVKEAAEAAAKQAKNSKKETATSSATYKQNSDLRQRLFPAIAERRIGDDSSSSDEDDDGESSSSSS 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10793166 10796576 - CcPI632755_02g008970.1 Cco02g0897 171654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0897 928 PRINTS Proline rich extensin signature 208 229 - -
Cco02g0897 928 PRINTS Proline rich extensin signature 189 201 - -
Cco02g0897 928 PRINTS Proline rich extensin signature 153 165 - -
Cco02g0897 928 PRINTS Proline rich extensin signature 232 248 - -
Cco02g0897 928 PRINTS Proline rich extensin signature 168 184 - -
Cco02g0897 928 PRINTS Proline rich extensin signature 362 387 - -
Cco02g0897 928 MobiDBLite consensus disorder prediction 147 253 - -
Cco02g0897 928 MobiDBLite consensus disorder prediction 307 358 - -
Cco02g0897 928 MobiDBLite consensus disorder prediction 914 928 - -
Cco02g0897 928 MobiDBLite consensus disorder prediction 160 195 - -
Cco02g0897 928 MobiDBLite consensus disorder prediction 365 429 - -
Cco02g0897 928 MobiDBLite consensus disorder prediction 877 895 - -
Cco02g0897 928 SUPERFAMILY Formin homology 2 domain (FH2 domain) 401 875 - -
Cco02g0897 928 PANTHER FORMIN-RELATED 113 917 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Cco02g0897 928 MobiDBLite consensus disorder prediction 873 928 - -
Cco02g0897 928 Coils Coil 861 881 - -
Cco02g0897 928 Gene3D Formin, FH2 domain 458 897 IPR042201 -
Cco02g0897 928 Pfam Formin Homology 2 Domain 456 856 IPR015425 -
Cco02g0897 928 ProSiteProfiles Formin homology-2 (FH2) domain profile. 450 883 IPR015425 -
Cco02g0897 928 SMART it6_source 450 872 IPR015425 -
Cco02g0897 928 MobiDBLite consensus disorder prediction 307 459 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0897 Cco-Chr2:10793166 Cco07g0242 Cco-Chr7:2495221 8.40E-98 dispersed
Cco02g1315 Cco-Chr2:24954984 Cco02g0897 Cco-Chr2:10793166 9.80E-107 transposed
Cco11g0111 Cco-Chr11:1182128 Cco02g0897 Cco-Chr2:10793166 9.50E-97 transposed
Cco02g0897 Cco-Chr2:10793166 Cco05g1695 Cco-Chr5:24880812 6.80E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0897 K28090 - csv:101206094 1050.04