Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0899 ATGGACTACTCTCCACCAAACTGGAACTGGCTCTTCGATTACTATACAATGGATGATCTCCCCGTCGTCGACGCCCACTTCTCGCCGCCGCAGTCCATCAGTTTCTCCTGGTCCAATCCCTCCATCAACTTTTCATCTCAACATAGCCTTGAGGTAGATTGCTCATATGAAGATCTGGACAGCTCAAAGGAAATGGGTCGGAAACGGCTAAGGGGTGAAACAAGTGCTGCATCTACCTCCAAAGCCTGCAGAGAGAAACAGAGGAGAGATAAGCTGAATGAGAGGTTCTTGGAATTGGCTACTATCCTGGAACCTGGAAAACCACCCAAAACCGACAAGGTTGCAATCTTGAGTGATGCTATCAGAATGATGTCCGATTTACAATGTGAAACTCAGAAGCTGAGAGAATCGATGGAGGATTTGAAGGCAAAAATCAGAGAACTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGGTTGAGAGCAGAGAAAGAAAATTTGGAGCTGCAAATCAAAGCAGTGAATACTCGAGCAGCGGACATCCAGCATCCTCCCCCTACACTGTCAGCTGCATTTACAGCACAAGGGCAAGTGGCTGGTAACAAGTTGATGCCTTTCATTGGTTATCCTGGCATTGCCATGTGGCAGTTCTTGCCGCCTGCAGCCGTCGACATATCACAGGATCACGTGCTCCGCCCACCAGTTGCTTAA 717 47.56 MDYSPPNWNWLFDYYTMDDLPVVDAHFSPPQSISFSWSNPSINFSSQHSLEVDCSYEDLDSSKEMGRKRLRGETSAASTSKACREKQRRDKLNERFLELATILEPGKPPKTDKVAILSDAIRMMSDLQCETQKLRESMEDLKAKIRELKVEKNELRDEKQRLRAEKENLELQIKAVNTRAADIQHPPPTLSAAFTAQGQVAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10824027 10826865 + CcPI632755_02g008990.1 Cco02g0899 171656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0899 238 FunFam Transcription factor bHLH34 67 125 - -
Cco02g0899 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 153 IPR036638 GO:0046983(InterPro)
Cco02g0899 238 SMART finulus 82 133 IPR011598 GO:0046983(InterPro)
Cco02g0899 238 Coils Coil 124 179 - -
Cco02g0899 238 Gene3D - 73 157 IPR036638 GO:0046983(InterPro)
Cco02g0899 238 Pfam Helix-loop-helix DNA-binding domain 79 128 IPR011598 GO:0046983(InterPro)
Cco02g0899 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983(InterPro)
Cco02g0899 238 CDD bHLH_AtILR3_like 81 156 - -
Cco02g0899 238 MobiDBLite consensus disorder prediction 68 87 - -
Cco02g0899 238 PANTHER BHLH TRANSCRIPTION FACTOR 10 238 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0899 Cco-Chr2:10824027 Cco10g0542 Cco-Chr10:6492922 1.80E-60 dispersed
Cco02g0899 Cco-Chr2:10824027 Cco05g1689 Cco-Chr5:24706954 5.00E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58741 PF00010 HLH 1.50E-11 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0899 - - - 0.0