Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g0899 | ATGGACTACTCTCCACCAAACTGGAACTGGCTCTTCGATTACTATACAATGGATGATCTCCCCGTCGTCGACGCCCACTTCTCGCCGCCGCAGTCCATCAGTTTCTCCTGGTCCAATCCCTCCATCAACTTTTCATCTCAACATAGCCTTGAGGTAGATTGCTCATATGAAGATCTGGACAGCTCAAAGGAAATGGGTCGGAAACGGCTAAGGGGTGAAACAAGTGCTGCATCTACCTCCAAAGCCTGCAGAGAGAAACAGAGGAGAGATAAGCTGAATGAGAGGTTCTTGGAATTGGCTACTATCCTGGAACCTGGAAAACCACCCAAAACCGACAAGGTTGCAATCTTGAGTGATGCTATCAGAATGATGTCCGATTTACAATGTGAAACTCAGAAGCTGAGAGAATCGATGGAGGATTTGAAGGCAAAAATCAGAGAACTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGGTTGAGAGCAGAGAAAGAAAATTTGGAGCTGCAAATCAAAGCAGTGAATACTCGAGCAGCGGACATCCAGCATCCTCCCCCTACACTGTCAGCTGCATTTACAGCACAAGGGCAAGTGGCTGGTAACAAGTTGATGCCTTTCATTGGTTATCCTGGCATTGCCATGTGGCAGTTCTTGCCGCCTGCAGCCGTCGACATATCACAGGATCACGTGCTCCGCCCACCAGTTGCTTAA | 717 | 47.56 | MDYSPPNWNWLFDYYTMDDLPVVDAHFSPPQSISFSWSNPSINFSSQHSLEVDCSYEDLDSSKEMGRKRLRGETSAASTSKACREKQRRDKLNERFLELATILEPGKPPKTDKVAILSDAIRMMSDLQCETQKLRESMEDLKAKIRELKVEKNELRDEKQRLRAEKENLELQIKAVNTRAADIQHPPPTLSAAFTAQGQVAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA | 238 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 10824027 | 10826865 | + | CcPI632755_02g008990.1 | Cco02g0899 | 171656 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g0899 | 238 | FunFam | Transcription factor bHLH34 | 67 | 125 | - | - | |
Cco02g0899 | 238 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 81 | 153 | IPR036638 | GO:0046983(InterPro) | |
Cco02g0899 | 238 | SMART | finulus | 82 | 133 | IPR011598 | GO:0046983(InterPro) | |
Cco02g0899 | 238 | Coils | Coil | 124 | 179 | - | - | |
Cco02g0899 | 238 | Gene3D | - | 73 | 157 | IPR036638 | GO:0046983(InterPro) | |
Cco02g0899 | 238 | Pfam | Helix-loop-helix DNA-binding domain | 79 | 128 | IPR011598 | GO:0046983(InterPro) | |
Cco02g0899 | 238 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 76 | 127 | IPR011598 | GO:0046983(InterPro) | |
Cco02g0899 | 238 | CDD | bHLH_AtILR3_like | 81 | 156 | - | - | |
Cco02g0899 | 238 | MobiDBLite | consensus disorder prediction | 68 | 87 | - | - | |
Cco02g0899 | 238 | PANTHER | BHLH TRANSCRIPTION FACTOR | 10 | 238 | IPR044818 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0899 | Cco-Chr2:10824027 | Cco10g0542 | Cco-Chr10:6492922 | 1.80E-60 | dispersed | |
Cco02g0899 | Cco-Chr2:10824027 | Cco05g1689 | Cco-Chr5:24706954 | 5.00E-55 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58741 | PF00010 | HLH | 1.50E-11 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g0899 | - | - | - | 0.0 |