Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0911 ATGAGAATGGGGAGGCTTACTTCTTTGGTGTTGGCCACTATAGTTGGTCTTCTAGCCCTGATAGGCTCCACTCAAGCTCAGTTGCAGCTTGGTTTCTATGCCAAAAGCTGCCCAAACGCTGAGAAGATTGTGCTGGATTTCGTTCACCAGCATATCCACAATGCCCCTTCACTGGCAGCAACCTTCATTAGAATGCACTTCCATGATTGCTTTGTCAGGGGTTGTGACGGATCTGTGCTTATAAACTCCACCTCAAATAACCAAGCTGAGAAGGATTCTCAACCAAATCAAACACTCAGAGGTTTTGACTTCATTGATAAAGTCAAAAGCTTACTTGAAGCTGAATGCCCTGGAGTGGTCTCTTGCGCAGATGTTCTTTCCTTGGTTGCAAGAGATACCATTGTAGCCACAGGAGGTCCATACTGGGAAGTTCCAACTGGCCGAAGGGATGGAGTAATCTCAAGATCATCAGAAGCTTTGAATAACATTCCTCCTCCATTTGGGAACTTTTCCACACTTCAAAGACTTTTCGCAAACCAAGGCCTTGATCTAAAAGACTTGGTGTTACTATCTGGCGCTCACACAATCGGTATCGCACACTGCTCATCATTCAGAAACCGACTCTACAATTTCACCGGCGTCGGAGACCAAGATCCCTCTCTGGACCCAAGATACGCCGCTAATCTGAAGGCCAACAAATGCAAAACTCCGACCGACAACAGCAAAGTGGAAATGGACCCTGGAAGTCGCAACACTTTTGACCTTAGCTACTATTCTCTCCTACTAAAAAGGAGGGGCCTCTTCGAATCCGATGCTGCTCTCACTACAGACGCAACTACATTGGGTTTAGTTCAGAAACTGGTACAAGGACCCATTGAAGAATTCTTCGCTGAATTTGCAGCATCCATGGAGAAAATGGGTCGGATTAAAGTGAAGACTGGAACTGAAGGTGTTATGCGAGATTTTGGTGGGGATTGTTTGAAGGAAAAAAGAAGATTCACCGGAAGAAATAGGAGTCTGTGTCTACCAAAGGGTCTGGGTGGCCTGAATTTCCGAGATCTTATTAGCTTCAACCAAGCATTGGTGGCCAAACAGCTGAAGAAGGGAGCAAGCCTTCCTCCTTATGGAAAAGCCTTCT 1138 45.96 MRMGRLTSLVLATIVGLLALIGSTQAQLQLGFYAKSCPNAEKIVLDFVHQHIHNAPSLAATFIRMHFHDCFVRGCDGSVLINSTSNNQAEKDSQPNQTLRGFDFIDKVKSLLEAECPGVVSCADVLSLVARDTIVATGGPYWEVPTGRRDGVISRSSEALNNIPPPFGNFSTLQRLFANQGLDLKDLVLLSGAHTIGIAHCSSFRNRLYNFTGVGDQDPSLDPRYAANLKANKCKTPTDNSKVEMDPGSRNTFDLSYYSLLLKRRGLFESDAALTTDATTLGLVQKLVQGPIEEFFAEFAASMEKMGRIKVKTGTEGVMRDFGGDCLKEKRRFTGRNRSLCLPKGLGGLNFRDLISFNQALVAKQLKKGASLPPYGKAF 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10993993 10996948 - CcPI632755_02g009110.1 Cco02g0911 171668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0911 379 Gene3D Peroxidase, domain 2 164 306 - -
Cco02g0911 379 Pfam Peroxidase 46 288 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0911 379 CDD secretory_peroxidase 27 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco02g0911 379 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601(InterPro)
Cco02g0911 379 ProSiteProfiles Plant heme peroxidase family profile. 27 320 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0911 379 FunFam Peroxidase 31 171 - -
Cco02g0911 379 Gene3D - 31 320 - -
Cco02g0911 379 SUPERFAMILY Heme-dependent peroxidases 27 320 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0911 379 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0911 379 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0911 379 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0911 379 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0911 379 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0911 379 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0911 379 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0911 379 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0911 379 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0911 379 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Cco02g0911 379 FunFam Peroxidase 164 306 - -
Cco02g0911 379 PANTHER PEROXIDASE 25-RELATED 22 320 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cco02g0911 379 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0911 379 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0911 379 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0911 379 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g0911 379 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0179 Cco-Chr2:1741526 Cco02g0911 Cco-Chr2:10993993 7.00E-89 dispersed
Cco02g0180 Cco-Chr2:1750309 Cco02g0911 Cco-Chr2:10993993 1.00E-87 dispersed
Cco02g0911 Cco-Chr2:10993993 Cco06g0563 Cco-Chr6:6085878 2.70E-79 dispersed
Cco02g0178 Cco-Chr2:1727025 Cco02g0911 Cco-Chr2:10993993 3.40E-122 wgd
Cco02g0911 Cco-Chr2:10993993 Cco04g0347 Cco-Chr4:10025468 5.20E-54 wgd
Cco02g0911 Cco-Chr2:10993993 Cco05g2832 Cco-Chr5:35980864 4.10E-51 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0911 K00430 - csv:101213629 593.193