Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0923 ATGAACGATTTGCTCACGGACTCATTCGTTAGCGATGCCAAAGGTGAGGCTTCTAGAGAAATTGATCTCGAGAAGGGAACTCGAGTTCCGCGAAGCAATTCTGACATGGGAATGGAGGCCTTCAATAAGCAGATACAAGACGTTGAGGTTCAAGTAGAGAACCTCTCTGGGCTTCTTATTAAACTGAAGGATGCTAATGAGGAATCGAAGGCTGTTACCAAAGCATTAGAGATGAAAGTCGTTTACTTCTTTAGCGTTTGTTTCAGTCTTAGTACCACATGTCTGTTTGCTCCAAGGGCTCTTGTCATTTCAGCTATCAAGAAGCGTATGGAAAAGGATATCGATGAAGTAGGGAAAATAGCACGCAATGTCAAGGGGAAGCTGGAGGCCAACTTGACCAATAGGCAGAAGCCCGGGTGTGAGAAGGGAACGGCTATTGACAGAGCAAGAATGAACGTGACAAATGCCTTGACAAAAAAGTTCAAGGATCTGATGATAGAATTTCAGACCCTTCGGCAAAGAATTCAAGATGAGTACCGCGAAGTCGTGGAAAGACGAGTGATTACAGTTACGGGAAGCAGACCAGATGAGACGACAATTGATCACCTTATAGAAACTGGAAACAGTGAGCAAATATTCCAGAATGCATTTGTACAAATGGGACGAGGACAGGTTATGAGTGCGGTGGAGGAAATTCAAGAGCGACACGATGCAGTTAAAGAGATTGAGAAAAGGCTCTCAGAATTGCATCAGATTTACCTTGACATGGCAGTTTTATTGGAAGCCCAGAGTGAAATTTTGGATAACATAGAAAATCAGGTAACGAATGCAGTGGACCACGTTCGAACGGGAACCGATGCACTCCAGACAGCGAAGAGCTTACAGAAGCGATCAAGAAAATGCATGATGATTGGCATCATATTGCTGCTGGTCATAGCAATCATAATCGTCCTCGCAGTGCATCCATGGAAGAAGTAA 978 44.07 MNDLLTDSFVSDAKGEASREIDLEKGTRVPRSNSDMGMEAFNKQIQDVEVQVENLSGLLIKLKDANEESKAVTKALEMKVVYFFSVCFSLSTTCLFAPRALVISAIKKRMEKDIDEVGKIARNVKGKLEANLTNRQKPGCEKGTAIDRARMNVTNALTKKFKDLMIEFQTLRQRIQDEYREVVERRVITVTGSRPDETTIDHLIETGNSEQIFQNAFVQMGRGQVMSAVEEIQERHDAVKEIEKRLSELHQIYLDMAVLLEAQSEILDNIENQVTNAVDHVRTGTDALQTAKSLQKRSRKCMMIGIILLLVIAIIIVLAVHPWKK 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11123290 11126377 - CcPI632755_02g009230.1 Cco02g0923 171680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0923 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 229 291 IPR000727 -
Cco02g0923 325 Pfam Syntaxin 102 263 IPR006011 GO:0016020(InterPro)
Cco02g0923 325 Gene3D - 38 187 - -
Cco02g0923 325 SUPERFAMILY t-snare proteins 104 284 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cco02g0923 325 Gene3D - 219 321 - -
Cco02g0923 325 PANTHER SYNTAXIN 40 310 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cco02g0923 325 FunFam Syntaxin 132 222 322 - -
Cco02g0923 325 Coils Coil 38 65 - -
Cco02g0923 325 CDD SynN 38 216 IPR006011 GO:0016020(InterPro)
Cco02g0923 325 CDD SNARE_syntaxin1-like 228 290 - -
Cco02g0923 325 SMART SynN_4 33 180 IPR006011 GO:0016020(InterPro)
Cco02g0923 325 Pfam SNARE domain 265 317 IPR000727 -
Cco02g0923 325 SMART tSNARE_6 224 291 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0923 Cco-Chr2:11123290 Cco10g1337 Cco-Chr10:26334438 1.30E-82 dispersed
Cco02g0919 Cco-Chr2:11073483 Cco02g0923 Cco-Chr2:11123290 9.90E-67 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0923 K08486 - csv:101214355 483.796