Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0929 ATGCCTGCCGGAATTATGACACCGGCCAGAAGCATGGCGTCGATGATTGGAAGAAATGAGAATAATGCTGCGGGATTTGCCTCTCCTTCTGGATTTCCTCCTTCTCAGTCAAGCATGATGGACAGTCATCTCCTCCCCTTAGACATCCCTCAAAACACTTCCGAAAGCGACCTTGCTCGAATCCGAGATGATGACTTCGACAGTGCCACTAAATCCGGCAGCGACAACAACCCTGACCTTGTCTCCGGTGACGACCAAGATCCTCGTCCTAAAAAGAAGCGCTATCATCGTCATACTCAACATCAGATCCAAGAAATGGAAGCGTTCTTCAAGGAGTGTCCTCACCCTGATGACAAACAAAGAAAGGAATTAAGCAGGGAATTAGGGTTAGAGCCGTTGCAAGTCAAATTTTGGTTCCAAAACAAACGCACTCAAATGAAGAATCAACACGAGCGGCATGAGAACACTCAACTCAGAACAGAAAATGAGAAGCTTAGGGCTGATAACATGAGATACAGAGAAGCTCTTAGCAATGCCTCGTGCCCTAATTGTGGTGGCCCTACTGCCATTGGTGAAATGTCTTTTGATGAACATCATCTTAGACTCGAAAATGCCCGTCTTCGCGAAGAGATCGATCGCATTTCAGCAATAGCTGCAAAATACGTAGGGAAGCCAGTCGTGAACTACCCTCTACTTTCTCCACCAGTTCCAGCTCGCCCACTAGAGCTAGGAATGGGCAACTTCGGACCACAACCAGGCCTCGGAGGAGGAGATCTCTACAGCTCGGCCAGCGACCTGATCCGATCCATCAGCGCCCCAACCGAGGCTGATAAGCCAATGATCATCGAGCTAGCAGTTGCAGCCATGGAAGAGCTGACTAGAATGGCTCAAATGGGGGAGCCATTGTGGATGACTGGCCTTGATGGCTCCACCCATGTGCTCAATGAAGATGAGTACTTGAGAACGTTTCCTAGAGGCATTGGTCCTAAGCCTTCTGGGTTTAAATGTGAAGCCTCTCGTGAATCTGCTGTTGTCATCATGAACCACATTAACCTAGTTGAGATTCTCATGGATGTGAACCAATGGTCGACTTTATTTTCTGGAATTGTGTCTAGAGCTATGACACTTGAAGTATTATCAACCGGAGTTGCTGGAAATTACAATGGAGCTTTGCAAGTGATGACGTCGGAATTTCAAGTTCCATCGCCATTGGTTCCGACCCGGGAAAGCTACTTTGTTAGATATTGTAAGCAACATGGGGATGGGACATGGGCGGTGGTGGATGTTTCGTTGGATGATTTGCGCCCTACCCCCGGAGTTCGATGTAGACGAAGACCTTCCGGTTGTTTGATCCAAGAAATGCCAAATGGTTATTCGAAGGTTACATGGGTTGAGCATGTAGAGGTGGATGATAGAGGAGTTCATAATCTTTACAAGCAACTAGTGAGCTCTGGCCAAGCTTTTGGGGCCAAACGTTGGGTTACAACTTTAGATCGCCAATGTGAACGACTTGCTAGTGCCATGGCCACTAATATTCCAACTGGGGATGTTGGAGTGATAACGAATCAAGAAGGAAGAAAGAGCATGTTGAAGCTGGCTGAGAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGCGCCTCCACAACTCACACATGGACCACTTTGTCGGGTACGGGTGCGGACGATGTTCGAGTCATGACTCGAAAGAGCATCGACGACCCGGGAAGACCTCCTGGTATTGTCCTCAGTGCTGCAACTTCCTTCTGGCTCCATGTTCCACCCAAGAGAATCTTCGATTTCCTTCGAGATGAAAACTCTCGCAGCGAGTGGGACATTCTTTCCAACGGCGGAGTAGTTCAAGAAATGGCCCACATTGCCAACGGCCGTGACACTGGCAACTGCGTTTCTCTCTTACGAGTAAATAGCGCAAATTCAAGCCAAAGCAACATGCTAATCCTGCAAGAAAGCTGCACGGACCCAACAGCTTCATTTGTGATCTACGCTCCAGTTGACATAGTAGCAATGAACGTCGTCCTGAACGGCGGTGATCCCGACTACGTAGCGCTTCTCCCCTCAGGCTTTGCCATTCTCCCCGACGGCGCTGGCGGAGAGGGCGTTTCCGGTGGGTCGTTGCTGACGGTTGCATTTCAAATCCTGGTGGATTCAGTGCCCACGGCAAAACTGTCACTTGGGTCAATTGCAACGGTAAACAATCTGATAGCTTGTACGGTGGAGAGGATAAAAGCGTCATTATCATGTGAGAATGCATAA 2271 48.7 MPAGIMTPARSMASMIGRNENNAAGFASPSGFPPSQSSMMDSHLLPLDIPQNTSESDLARIRDDDFDSATKSGSDNNPDLVSGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPPVPARPLELGMGNFGPQPGLGGGDLYSSASDLIRSISAPTEADKPMIIELAVAAMEELTRMAQMGEPLWMTGLDGSTHVLNEDEYLRTFPRGIGPKPSGFKCEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDDLRPTPGVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCERLASAMATNIPTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLHVPPKRIFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDPTASFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGAGGEGVSGGSLLTVAFQILVDSVPTAKLSLGSIATVNNLIACTVERIKASLSCENA 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11258484 11263337 + CcPI632755_02g009290.1 Cco02g0929 171686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0929 756 FunFam Homeobox-leucine zipper protein HDG1 79 165 - -
Cco02g0929 756 MobiDBLite consensus disorder prediction 1 100 - -
Cco02g0929 756 SUPERFAMILY Bet v1-like 274 505 - -
Cco02g0929 756 FunFam Homeobox-leucine zipper protein GLABRA 2 283 502 - -
Cco02g0929 756 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco02g0929 756 Pfam Homeodomain 92 148 IPR001356 GO:0003677(InterPro)
Cco02g0929 756 Gene3D - 333 502 IPR023393 -
Cco02g0929 756 CDD homeodomain 92 150 IPR001356 GO:0003677(InterPro)
Cco02g0929 756 ProSiteProfiles START domain profile. 274 506 IPR002913 GO:0008289(InterPro)
Cco02g0929 756 SUPERFAMILY Homeodomain-like 78 149 IPR009057 -
Cco02g0929 756 SMART START_1 283 503 IPR002913 GO:0008289(InterPro)
Cco02g0929 756 Pfam START domain 284 503 IPR002913 GO:0008289(InterPro)
Cco02g0929 756 CDD START_ArGLABRA2_like 278 502 - -
Cco02g0929 756 MobiDBLite consensus disorder prediction 14 56 - -
Cco02g0929 756 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677(InterPro)
Cco02g0929 756 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 72 754 IPR042160 -
Cco02g0929 756 SMART HOX_1 90 153 IPR001356 GO:0003677(InterPro)
Cco02g0929 756 Coils Coil 143 175 - -
Cco02g0929 756 SUPERFAMILY Bet v1-like 522 748 - -
Cco02g0929 756 Gene3D - 81 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0929 Cco-Chr2:11258484 Cco04g1995 Cco-Chr4:34122675 1.60E-264 dispersed
Cco07g0134 Cco-Chr7:1400140 Cco02g0929 Cco-Chr2:11258484 1.80E-16 transposed
Cco02g0186 Cco-Chr2:1784621 Cco02g0929 Cco-Chr2:11258484 0.00E+00 wgd
Cco02g0929 Cco-Chr2:11258484 Cco05g1662 Cco-Chr5:23252715 3.00E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58745 PF01852 START 6.00E-59 CL0209 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0929 K09338 - csv:101214763 1438.32