Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g0936 | ATGAAGGTGTTTTGGATTAGGAGGAATGGGCATTGGGTCAAAAGCAGAGTGATGTTATTTGCATTATTATTGTTGTTTGGGATGTGGATGCCTTTGGGAGTGATCGGTGTTTCTTCTTCGAATCAAAGGGTGTTGAACGTTGGAGTTTTGTTCACTCTTGATTCGGTTATTGGAAGGTCTGCACAGCCTGCAATTTTAGCTGCCCTAGACGACGTCAATGCCGATAACAACATTCTTCCAGGAACAAAGCTGAATTTGATCCTACATGACACCAACTGCAGCGGATTTCTTGGAACTCTGGAAGCCTTGCAGTTGATGGAAGATGAAGTGGTTGCTGTTATTGGGCCGCAATCTTCGGGCATCGTTCATGTCATTTCTCATGTTGTTAATGAACTTCATATACCGCTTCTATCATTTGGAGCTACAGATCCTGCTTTGTCTGCAGAGCAATACCAATATTTCGTTCGGACCACACAAAGTGATTACTTCCAAATGAACGCAATTGCTGATATGGTAAATTATTTTGGATGGAGAGAGGTCGTTGCCATTTTTGTAGATGATGATAATGGCAGGAATGGGATTTCAGCACTGAACGATGCCTTGGCGAAGAAGCGAGCCAAGATCTCTTATAAGGTTGCCTTCCCTCCAAGATCCTCCAATAACGCAATAAGTGACTTGTTGGTTTCGGTAAACCTAATGGAATCTCGGGTTTACATTGTACACGTCAATCCTGACACAGGTTTTTCAGTATTTTCAATAGCTAAGAAACTTCAGATGATGGGTAGTGGCTATGTCTGGATCGCAACAGATTGGCTTTCTTCTTTTCTTGATTCTTTTGAAACAAATATTCTTGAGGTAATGAATCAATTACAGGGTGTTGTTGCTCTTCGTCACCACACTCCAGATGGTGATTTGAAGAAAAAATTTGTCTCCAAGTGGAGGAATCTAAAATACAAGAAGGGTCCAAACTTCAACTCTTATGCACTTTATGCATACGACTCTGTTTGGTTAGCAGCACATGCTCTCGACACATTTATTAAAGAAGGTGGAAATATATCCTTTTCCAATGACCCGAAGTTACGTGAAAACAATGAAAGCATGCTACACTTAAAATCTCTTCGAGTCTTTAACGACGGCAAACAACTTCTACAAACAATTAAGAGAACAAAATTCACTGGTGTAAGTGGGAAAATTCAATTTGGGGATGATAGAAATTTAATTCATCCATCTTATGATATCCTGAACATTGGAGGAACTAGTTCACGTAGAATTGGTTACTGGTCAAATTATTCTGGTTTATCAACTATTGCACCAGAAAACTTGTATACCAAGGCTCTTAATGCTTCCCCTAATAACCATCTTTACAGTGTCATATGGCCGGGTGAAGTAACGGCCATTCCTCGAGGATGGGTGTTTCCACATGATGGGAAACCATTACAAATTGTAGTACCTAACCGAGTGAGTTACAAAGCCTTTGTTTCTAAAGACAAGAACCCTCCAGGTGTTAAAGGATATTGTATAGATGTGTTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACATATATATATTATATGGAGATGGAAAGGACACTCCTGAGTACAACAATCTTGTAGCTGAAGTTTCACAGAACAAATACGATGCAGCTGTTGGAGACATTACAATTGTAACAAATAGAACAAAGATTGTAGACTTCACACAACCATTTATGGAGTCAGGACTTGTTGTAGTTACTGTCGTCAAAGAGGAGAAGTCTAGTCCATGGGCTTTTCTCAGGCCATTTACTATTCAAATGTGGGTTATCACTGCAATATTCTTTATTTTTGTTGGAGCAGTTGTTTGGATTCTCGAGCACCGAACTAATGAAGAGTTTCGTGGTCCGCCGAGGCAACAATTAATTACAATATTTTGGTTTAGTTTCTCAACAATGTTTTTTTCTCATAAGGAAAACACTGTAAGCACCCTCGGACGGTTGGTGCTGTTAATATGGCTCTTTGTTGTGTTAATTATCAACTCAAGCTACACAGCTAGTTTGACGTCGATCTTAACGGTACAACAACTAACGTCAAAGATTGAAGGGATTGATAGCTTAATCTCTAGCACAGATGCCATTGGAGTTCAAGAAGGGTCATTTGCTTTGAATTATTTGATTGATGAATTGAATATAGCAACATCTAGGATCATTAAACTGAAAAGTCAAGAGGAATATGTCGATGCTCTTAAGCGTGGATCGAGAAATGGTGGGGTCGCTGCCATTGTTGACGAGCTTCCTTATGTTGAGCTTTTTTTGGCTGGTACCAATTGCATATTCAGGAGAGTTGGACAAGAGTTCACGAAAAGCGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTTGCAGTTGATTTGTCAACAGCCATTCTTCAACTCTCAGAGAATGGTGATCTTCAAAAGATCCACGACAAATGGCTATCGCGACCTGAGTGTTCGATGAGCCTAAACCAAGTTGACGTAAACAAGCTATCATTGAGTAGCTTTTGGGGATTGTTCCTAATTTGTGCCATTTCCTGCTTTGTTGCTCTTTCAATATTCTTCTTTCGAGTATTATTCCAATACCGAAGATTTACCCCGGAAATCCAGTTTGAAGTCGAGGAAATTGAATCTGTTAGGACGAGACGCCTTAGTCGTACAACCAGCTTCATGCACTTTGTAGATAAAAAAGAAGCAGAAGTTAAAGGCAAGCTTAAAAGAAAAGCTAGTGATAACAAACAAGCTAGCCAGAGCTCAGAGGGCAACCCTAATTCATCTCCTTGA | 2802 | 40.11 | MKVFWIRRNGHWVKSRVMLFALLLLFGMWMPLGVIGVSSSNQRVLNVGVLFTLDSVIGRSAQPAILAALDDVNADNNILPGTKLNLILHDTNCSGFLGTLEALQLMEDEVVAVIGPQSSGIVHVISHVVNELHIPLLSFGATDPALSAEQYQYFVRTTQSDYFQMNAIADMVNYFGWREVVAIFVDDDNGRNGISALNDALAKKRAKISYKVAFPPRSSNNAISDLLVSVNLMESRVYIVHVNPDTGFSVFSIAKKLQMMGSGYVWIATDWLSSFLDSFETNILEVMNQLQGVVALRHHTPDGDLKKKFVSKWRNLKYKKGPNFNSYALYAYDSVWLAAHALDTFIKEGGNISFSNDPKLRENNESMLHLKSLRVFNDGKQLLQTIKRTKFTGVSGKIQFGDDRNLIHPSYDILNIGGTSSRRIGYWSNYSGLSTIAPENLYTKALNASPNNHLYSVIWPGEVTAIPRGWVFPHDGKPLQIVVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAAINLLPYPVPHIYILYGDGKDTPEYNNLVAEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKEEKSSPWAFLRPFTIQMWVITAIFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLLIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISSTDAIGVQEGSFALNYLIDELNIATSRIIKLKSQEEYVDALKRGSRNGGVAAIVDELPYVELFLAGTNCIFRRVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRPECSMSLNQVDVNKLSLSSFWGLFLICAISCFVALSIFFFRVLFQYRRFTPEIQFEVEEIESVRTRRLSRTTSFMHFVDKKEAEVKGKLKRKASDNKQASQSSEGNPNSSP | 933 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 11346367 | 11351191 | - | CcPI632755_02g009360.1 | Cco02g0936 | 171693 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g0936 | 933 | FunFam | Glutamate receptor | 160 | 320 | - | - | |
Cco02g0936 | 933 | Pfam | Ligand-gated ion channel | 599 | 853 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Cco02g0936 | 933 | Pfam | Ligated ion channel L-glutamate- and glycine-binding site | 500 | 581 | IPR019594 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Cco02g0936 | 933 | PIRSF | IGluLR_plant | 14 | 932 | IPR017103 | - | |
Cco02g0936 | 933 | SMART | GluR_14 | 480 | 822 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Cco02g0936 | 933 | Pfam | Receptor family ligand binding region | 61 | 418 | IPR001828 | - | |
Cco02g0936 | 933 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 118 | 146 | - | - | |
Cco02g0936 | 933 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 249 | 272 | - | - | |
Cco02g0936 | 933 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 58 | 74 | - | - | |
Cco02g0936 | 933 | Gene3D | - | 160 | 433 | - | - | |
Cco02g0936 | 933 | Gene3D | - | 474 | 588 | - | - | |
Cco02g0936 | 933 | FunFam | Glutamate receptor | 590 | 720 | - | - | |
Cco02g0936 | 933 | SUPERFAMILY | Periplasmic binding protein-like II | 455 | 822 | - | - | |
Cco02g0936 | 933 | Gene3D | - | 719 | 823 | - | - | |
Cco02g0936 | 933 | CDD | PBP1_GABAb_receptor_plant | 46 | 434 | IPR044440 | - | |
Cco02g0936 | 933 | CDD | GluR_Plant | 477 | 820 | - | - | |
Cco02g0936 | 933 | FunFam | Glutamate receptor | 474 | 590 | - | - | |
Cco02g0936 | 933 | Gene3D | - | 64 | 408 | - | - | |
Cco02g0936 | 933 | SUPERFAMILY | Periplasmic binding protein-like I | 40 | 471 | IPR028082 | - | |
Cco02g0936 | 933 | Gene3D | - | 589 | 718 | - | - | |
Cco02g0936 | 933 | FunFam | Glutamate receptor | 716 | 824 | - | - | |
Cco02g0936 | 933 | MobiDBLite | consensus disorder prediction | 907 | 933 | - | - | |
Cco02g0936 | 933 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 46 | 908 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0936 | Cco-Chr2:11346367 | Cco11g1939 | Cco-Chr11:32016696 | 3.60E-282 | dispersed | |
Cco02g0936 | Cco-Chr2:11346367 | Cco02g0939 | Cco-Chr2:11389427 | 0.00E+00 | proximal | |
Cco08g1122 | Cco-Chr8:22975868 | Cco02g0936 | Cco-Chr2:11346367 | 6.40E-141 | transposed | |
Cco02g0189 | Cco-Chr2:1813874 | Cco02g0936 | Cco-Chr2:11346367 | 1.60E-242 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g0936 | K05387 | - | csv:101215485 | 1635.93 |