Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0939 ATGAAGGTGTTTTGGATTAGGAGGAATGGGCATTGGGTCAAAAGCAGAGTGATGTTATTTGCATTATTATTGTTGTTTGGGATGTGGATGCCTTTGGGAGTGATCGGTGTTTCTTCTTCGAATCAAAGGGTGTTGAACGTTGGAGTTTTGTTCACTCTTGATTCGATTATTGGAAGGTCTGCACAGCCTGCAATTTTAGCTGCCCTGGACGACGTCAATGCCGATAACAACATTCTTCCAGGAACAAAGCTGAATTTGATCCTACATGACACCAACTGCAGCGGATTTCTTGGAACTCTGGAAGCCTTGCAGTTGATGGAAGATGAAGTGGTTGCTGTTATTGGGCCGCAATCTTCTGGCATCGTTCATGTCATTTCTCATGTTGTTAATGAACTTCATATACCGCTTCTATCATTTGGAGCTACAGATCCTGCTTTGTCTGCACAGCAATACCAGTATTTCGTTCGGACCACACAAAGTGATTACTTTCAAATGAATGCAATTGCTGATATGGTAGATTATTTTGGATGGAGAGAAGTCGTTGCCATTTTTGTAGATGATGATAATGGCAGGAGTGGGATATCAGCATTGAATGATGCCTTAGTGAAGAAGCGAGCCAAGATCTCTTATAAGGCTGCCTTCCCTCCTGGATCTTCCAATAGCGAAATAAGTGACTTGTTGGCTTCGATAAACTTGATGGAATCTCGGGTTTACATTGTACACGTCAATCCCGACACAGGTTTATCAATATTTTCAATAGCTAAGAAACTTCAAATGATGGGTAGTGGCTATGTCTGGATCGCAACAGATTGGCTTCCTTCTTTTCTTGATTCTTTTGAAACAAATAGTCCTGATGTAATGAATCAGTTACAAGGTGTTGTTGCTCTTCGTCACCACACCCCTGATGACAATCTAAAGAAAAACTTTGTCTCCAAGTGGAGGAATCTAAAATACAAGAAGAGTCCAAATTTCAACTCTTATGCACTCTATGCATACGACTCTGTTTGGTTAGCAGCCCGTGCTCTTGACACATTTATTAAAGAAGGTGGAAATATATCCTTTTCCAATGACCCGAAGTTACGTGAAAACAATGGAAGCATGTTGCAGTTAAAATCCCTCCGAGTGTTTAACGACGGTGAACAATTTCTACAGACAATTAAGAGAACAAACTTCACTGGTGTAAGTGGGCAAATTCAATTTGGGGATGATAGAAATTTGATTCATCCAGCTTATGATATCCTGAACATTGGGGGAACTGGTTCACGTAGAATTGGCTATTGGTCAAATTATTCTGGTCTAACAACTATTGCACCAGAGAACTTGTATACCAAGCATCTTAATGCTTCCTTAAATAACCATCTCTATAGTGTCATATGGCCAGGTGAAATAACGACCGTTCCTCGAGGATGGGTGTTTCCACACAATGGGAAACCATTACAAATTGTAGTACCTAACCGAGTGAGTTACAAAGCCTTTGTGTCTAAAGACAAGAACCCTCCAGGAGTTAAAGGATATTGTATAGATGTATTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACATATATATATTATATGGAGATGGAAAGGACACTCCTGAGTACAACAGTCTTGTATATGAGGTTTCACAGAATAAATACGATGCAGCTGTTGGAGATATTACTATTGTAACGAATAGGACAAAGATTGTAGACTTCACACAACCATTTATGGAGTCGGGACTTGTTGTAGTTACTGTCGTCAAACAGGAGAAGTCTAGTCCATGGGCTTTTCTCAGGCCGTTTACTATTCAAATGTGGGCTGTCACTGCAATATTTTTTATTTTTGTTGGAGCAGTTGTTTGGATTCTCGAGCACCGGACTAATGAAGAGTTTCGTGGTCCGCCAAGGCAACAATTAATTACAATATTTTGGTTTAGTTTCTCAACGATGTTCTTTTCTCATAAGGAAAATACTGTAAGCACCCTTGGACGGTTGGTGCTGATAATATGGCTCTTTGTTGTGTTAATTATCAACTCAAGCTACACAGCTAGTTTGACGTCGATCTTAACAGTTCAACAACTAACGTCAAAGATTGAAGGGATTGATAGCTTAATCTCTAGCACAGATGCCATTGGAGTTCAAGAAGGGTCATTTGCATTGAATTATCTTATTGATGAGCTGAATATAGCAGCATCTAGGATCATTAAATTGAAAAATCAAGAGGAATATGCTGATGCTCTTAAGCGTGGATCAGGAAATGGTGGGGTCGCTGCCATTGTTGACGAGCTTCCTTATGTTGAGCTTTTTTTGGCTGGTACCGATTGCCTATACAGGACAGTTGGACAGGAGTTCACGAAAAGCGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTTGCAGTTGATTTGTCAACAGCGATTCTTCAACTTTCAGAGAATGGTGATCTTCAAAAGATCCACGACAAATGGCTCTCGCGAACTGAGTGTTCGATGAGCTTGAACCAAGTCGACATAAGCCAACTATCACTAAGTAGCTTTTGGGGATTGTTCCTAATTTGTGGCATTGCATGTTTTGTTGCTCTTTCGGTATTCTTCTTTCGAGTATTATTCCAATATCGAAGATTTACCCCAGAAAACCAGCCTGAAGTTGAAGAGATTGAACCTGTTAGGACGAGACGCCTTAGTCGTACAACTAGCTTCATGCACTTTGTTGATAAAAAAGAAGCAGAAGTCAAAGGCAAACTAAAAAAAAAAACAAGTGATAAGAAACAAACTAGTCAGAGCTCAGAGGACCACCTTGATTCACCTCCTTGA 2802 40.36 MKVFWIRRNGHWVKSRVMLFALLLLFGMWMPLGVIGVSSSNQRVLNVGVLFTLDSIIGRSAQPAILAALDDVNADNNILPGTKLNLILHDTNCSGFLGTLEALQLMEDEVVAVIGPQSSGIVHVISHVVNELHIPLLSFGATDPALSAQQYQYFVRTTQSDYFQMNAIADMVDYFGWREVVAIFVDDDNGRSGISALNDALVKKRAKISYKAAFPPGSSNSEISDLLASINLMESRVYIVHVNPDTGLSIFSIAKKLQMMGSGYVWIATDWLPSFLDSFETNSPDVMNQLQGVVALRHHTPDDNLKKNFVSKWRNLKYKKSPNFNSYALYAYDSVWLAARALDTFIKEGGNISFSNDPKLRENNGSMLQLKSLRVFNDGEQFLQTIKRTNFTGVSGQIQFGDDRNLIHPAYDILNIGGTGSRRIGYWSNYSGLTTIAPENLYTKHLNASLNNHLYSVIWPGEITTVPRGWVFPHNGKPLQIVVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAAINLLPYPVPHIYILYGDGKDTPEYNSLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKQEKSSPWAFLRPFTIQMWAVTAIFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISSTDAIGVQEGSFALNYLIDELNIAASRIIKLKNQEEYADALKRGSGNGGVAAIVDELPYVELFLAGTDCLYRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSMSLNQVDISQLSLSSFWGLFLICGIACFVALSVFFFRVLFQYRRFTPENQPEVEEIEPVRTRRLSRTTSFMHFVDKKEAEVKGKLKKKTSDKKQTSQSSEDHLDSPP 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11389427 11394250 - CcPI632755_02g009390.1 Cco02g0939 171696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0939 933 Pfam Ligated ion channel L-glutamate- and glycine-binding site 500 581 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Cco02g0939 933 Gene3D - 160 433 - -
Cco02g0939 933 Gene3D - 774 827 - -
Cco02g0939 933 SUPERFAMILY Periplasmic binding protein-like II 454 821 - -
Cco02g0939 933 SUPERFAMILY Periplasmic binding protein-like I 40 471 IPR028082 -
Cco02g0939 933 FunFam Glutamate receptor 716 824 - -
Cco02g0939 933 FunFam Glutamate receptor 590 720 - -
Cco02g0939 933 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 46 910 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cco02g0939 933 Gene3D - 64 408 - -
Cco02g0939 933 Gene3D - 473 588 - -
Cco02g0939 933 CDD PBP1_GABAb_receptor_plant 46 434 IPR044440 -
Cco02g0939 933 CDD GluR_Plant 477 820 - -
Cco02g0939 933 Pfam Ligand-gated ion channel 599 853 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cco02g0939 933 FunFam Glutamate receptor 474 590 - -
Cco02g0939 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 118 146 - -
Cco02g0939 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 58 74 - -
Cco02g0939 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 249 272 - -
Cco02g0939 933 SMART GluR_14 480 822 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cco02g0939 933 PIRSF IGluLR_plant 14 932 IPR017103 -
Cco02g0939 933 Pfam Receptor family ligand binding region 61 418 IPR001828 -
Cco02g0939 933 Gene3D - 589 721 - -
Cco02g0939 933 MobiDBLite consensus disorder prediction 907 933 - -
Cco02g0939 933 FunFam Glutamate receptor 160 320 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0939 Cco-Chr2:11389427 Cco11g1939 Cco-Chr11:32016696 5.20E-281 dispersed
Cco02g0936 Cco-Chr2:11346367 Cco02g0939 Cco-Chr2:11389427 0.00E+00 proximal
Cco02g0939 Cco-Chr2:11389427 Cco02g0940 Cco-Chr2:11448201 5.80E-248 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0939 K05387 - csv:101215485 1671.37