Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0940 ATGGAGAGCTTATTAGTTCTTACATTCATTAGTTTGATATGGGCATTTCTTGCTGGTTCTGCATGTTGCCAAAGGCCTGCAGTTGTGAACATTGGTGCAGTTTTCACTTTTGATTCAATTATAGGAAGAGTGGCGAAGGTGGCAATGGAAGCTGCAGTTTCGGATGTGAATGCAGATACTTCCATTCTCAATGGAACAAAGCTGAATTTGGTCATGGCAGATACACATTGTAATGTTCTCTTGGGTTCTATTGGAGCTTTCCAGGTTCTTGAGAAAGATGTGGTAGCCATAGTTGGGCCTCAATCTTCAGTTGTAGCTCATATGGTTCTACAGATTGCTAATAATCTCCAAGTGCCTCTTATATCATATGCTGCCACTGACCCAACTTTATCTGCTCTCCAATTCCCCTTCTTCCTACGAACTACTCAGAGTGATGCCTACCAAATGACTGCTATGGCAGATTTAATTGACTTTTATGAGTGGAAGGAGGTGATCATGATCTTTGTGGATGATGATTATGGTAGAAATGGAATATCCACTTTAACTGATGAGCTTGACAAGAGGATGTTTAAAATTTCTTACAAAATACCCTTACCTTCTCATTTTAATCTCAGTGAAATCACAGTCATGCTCAATAAATCCAAGTTGCTCGGTCCTCGTGTCTATGTTGTTCATGTCAATCCTGATCCTAGATTAAGTATCTTCAAAATAGCCCATCAACTTGATATGATGACAAGTGATTATGTGTGGCTGGCAACAGATTGGCTTTCTACTACCTTAGATTCTGTTCTGCCTGTGCAACAAACCTCTATAGACATCCTTCAAGGTGTGGTTGTACTTCGTCAACATATTCCTGAATCCAACCGACAAACAACATTATGGACTCGGTTAAGGAAGATGCTGCCAGAAGGCTCCAGAAATTCTTCGTTGAATGTCTATGCTCTTAGTGCCTATGATACGATTCAAGTAGCTGCACGTGCAATTGATAAGTTTCTAAATGAAGGTAGGAGCATTACCTTCTCATTGAAGAACAAGTTTCATGATTTAAATACATCTAGAATGCCCTGGGGAAAGCTCAAAATATTTGATGATGGTGCTCTTCTTTTGAGCATATTGTTGCAGGCAAACTTTACTGGTTTAAGTGGTCAGATTGAGTTTAATTCAGATCGGAACCTTGTCAATAGAGGCTATGAGGTGATCAATATTGATCAGACGGGACTGCGTAGAGTTGGTTATTGGTCCAATGTCACAGGCTTTACAATCCAATCGCCAGAAACTCTGAAGCAGAAACGAACTAGTTATTCCCACCTGAACCAGGCTCTTGGCAATGTTACCTGGCCTGGTGGAAAGACAGAAAGACCGCGTGGATGGGTGATTGCAGACAATGAAAGACCATTAATAATTGGAGTGCCACGTAGAGTAAGTTTCATTGAATTTGTTACTGCAGTCAATGGAAGCCACGAAAACATTGAAGGATTCTGTATCGATCTGTTCAATGAAGCAAGAAAGCTGGTTCCATATGATGTTCCTTACAGATTTATACCTTTTGGAAATGGCTACTCCAATCCTAGTTATGATGACCTTGTGAAGAACGTTGCAAATGGTATATTTGATGCAGCTGTTGGAGATATTGCAATTGTTACCAATCGAACAAGGATTGTGGATTTTTCTCAGCCTTTTGCTTCTACCGGGCTTGTTATTGTGGCTCCAATAAAAAATTCAAAGTCAAATGCTTGGGTGTTCCTTAAACCATTTACAACAGAGATGTGGTGCGTAACATCGGCGTCCTTTTTTATGATTGGGGCAGTCATATGGCTTCTTGAGCATCGAGTAAATGATGATTTCCGTGGTCCACCAAAGAGGCAGCTAGTGACAGTAATACTGTTCAGCTTCTCGACATTGTTCAAAACGAATCAGGAAGCTACTGTAAGTCCACTTGGACGTATGGTAATGGTGGTGTGGCTTTTCTTATTGATGGTTATCACGTCAAGCTATACAGCCAGTCTCACTTCAATCCTTACAGTTCAGCAGCTTTCATCTCCCATTAAAGGACTTGATGACTTGATTACTAATGAACAGCCCATTGGCTACCAGGTAGGATCATTTGCGTATAGCTATCTGACCGAGAGTCTTTACCTTCCACGATCGAGGCTTGTATCTCTAGGCTCTCCAGAAGAGTATGAGTCAGCACTGCTAAAGGGGCCATTCAAAAAAGGAGGGGTGGCGGCTATTGTAGATGAACTTCCATATATGGAATTGTTCTTATCAGGGAGGAATGATTTCGGAATGATTGGACAGCCATTCACCAAGAGTGGATGGGGATTTGCTTTTCAGCGAGGATCTCCACTTGCGGTAGACATGTCAACTGCAATTCTAAAGCTTTCTGAGAATGGAAAGCTTCAGAAGATCCACGAGAAGTGGTTTTGTAAGATGGGTTGTCCTGGAGAGAGGAGAAGGAAGTCTGAGCCTAACCAGCTTCAATTGGTCAGCTTCTGGGGTCTGTATCTCTTGTGCGGTGCCTTTTCACTTGTTGCTCTTCTTATATTTTTGCTCCGCATAGTTCGACAATTTGCTCGTTACATACGACAACAGAAGGAATCTTCTCATGCAGAATTGGTGTCATCAAATTCCAACTCAAGCTGGACTCAGGTTATATATAAGTTTATTGACTTTGTTGATGAGAAGGAAGAAGCCATCAAGAGACTTTTTCGAAAGTATGATAATCAGAATCAGGCTAGCCAATAG 2745 41.35 MESLLVLTFISLIWAFLAGSACCQRPAVVNIGAVFTFDSIIGRVAKVAMEAAVSDVNADTSILNGTKLNLVMADTHCNVLLGSIGAFQVLEKDVVAIVGPQSSVVAHMVLQIANNLQVPLISYAATDPTLSALQFPFFLRTTQSDAYQMTAMADLIDFYEWKEVIMIFVDDDYGRNGISTLTDELDKRMFKISYKIPLPSHFNLSEITVMLNKSKLLGPRVYVVHVNPDPRLSIFKIAHQLDMMTSDYVWLATDWLSTTLDSVLPVQQTSIDILQGVVVLRQHIPESNRQTTLWTRLRKMLPEGSRNSSLNVYALSAYDTIQVAARAIDKFLNEGRSITFSLKNKFHDLNTSRMPWGKLKIFDDGALLLSILLQANFTGLSGQIEFNSDRNLVNRGYEVINIDQTGLRRVGYWSNVTGFTIQSPETLKQKRTSYSHLNQALGNVTWPGGKTERPRGWVIADNERPLIIGVPRRVSFIEFVTAVNGSHENIEGFCIDLFNEARKLVPYDVPYRFIPFGNGYSNPSYDDLVKNVANGIFDAAVGDIAIVTNRTRIVDFSQPFASTGLVIVAPIKNSKSNAWVFLKPFTTEMWCVTSASFFMIGAVIWLLEHRVNDDFRGPPKRQLVTVILFSFSTLFKTNQEATVSPLGRMVMVVWLFLLMVITSSYTASLTSILTVQQLSSPIKGLDDLITNEQPIGYQVGSFAYSYLTESLYLPRSRLVSLGSPEEYESALLKGPFKKGGVAAIVDELPYMELFLSGRNDFGMIGQPFTKSGWGFAFQRGSPLAVDMSTAILKLSENGKLQKIHEKWFCKMGCPGERRRKSEPNQLQLVSFWGLYLLCGAFSLVALLIFLLRIVRQFARYIRQQKESSHAELVSSNSNSSWTQVIYKFIDFVDEKEEAIKRLFRKYDNQNQASQ 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11448201 11453354 - CcPI632755_02g009400.1 Cco02g0940 171697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0940 914 Pfam Ligand-gated ion channel 809 839 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cco02g0940 914 FunFam Glutamate receptor 578 708 - -
Cco02g0940 914 Gene3D - 474 577 - -
Cco02g0940 914 Pfam Bacterial extracellular solute-binding proteins, family 3 487 586 IPR001638 -
Cco02g0940 914 Pfam Receptor family ligand binding region 46 403 IPR001828 -
Cco02g0940 914 PIRSF IGluLR_plant 1 914 IPR017103 -
Cco02g0940 914 CDD GluR_Plant 464 808 - -
Cco02g0940 914 Gene3D - 144 418 - -
Cco02g0940 914 Gene3D - 756 815 - -
Cco02g0940 914 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 871 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cco02g0940 914 Gene3D - 47 394 - -
Cco02g0940 914 Gene3D - 578 710 - -
Cco02g0940 914 SUPERFAMILY Periplasmic binding protein-like II 441 808 - -
Cco02g0940 914 FunFam Glutamate receptor 461 578 - -
Cco02g0940 914 FunFam Glutamate receptor 144 300 - -
Cco02g0940 914 CDD PBP1_GABAb_receptor_plant 30 420 IPR044440 -
Cco02g0940 914 SMART GluR_14 467 810 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cco02g0940 914 Coils Coil 892 912 - -
Cco02g0940 914 FunFam Glutamate receptor 704 812 - -
Cco02g0940 914 SUPERFAMILY Periplasmic binding protein-like I 22 458 IPR028082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0189 Cco-Chr2:1813874 Cco02g0940 Cco-Chr2:11448201 0.00E+00 dispersed
Cco02g0940 Cco-Chr2:11448201 Cco11g1939 Cco-Chr11:32016696 5.90E-261 dispersed
Cco02g0939 Cco-Chr2:11389427 Cco02g0940 Cco-Chr2:11448201 5.80E-248 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0940 K05387 - csv:101215715 1708.73