Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0982 ATGGATTGGACTAGAGGCCACCTCATCGGCCACGGCTCCTCCGCCACCGTCTTCCTCGCCACTGCTTCTTCCACCGGTGATGTCTTCGCCGTCAAATCCGCCGAGCTTTCACACTCTCAATCTCTACAAAGAGAGCAACAGTTTCTTTCTTCTTTTGCCTCTCCTTATGTAGTTTCTTATAGAGGCTTTGAGGTTTGTAGAGAACAGAGTGGGGTCATGATGTTCAATCTTTTCATGGAGTATTTCCCCAACGGTTCGCTTGCGGATGTAATTCGCCGCGGTGGAGGGCGGCGGCTCGATGAGGACACGATCGGAATCTACACACGGCAGTTACTAATGGGTCTGCAGTACATTCATTCCAAAGCCGTAGTACATTGCGACATTAAAGCCCACAACATTTTGATTGGTGGAGACGGTGTCGCCAAATTGGCTGATTTCGGGTGCGCCAGGTGGGCGACGAGCCAAACCGATCCAATTGGCGGCACGCCGCTGTTCATGGCGCCGGAGGTGGCTCGTGGTGAACAACAAGGTTTCGCGTCCGACATTTGGTCAATTGGGTGTACAATTATCGAAATGGCGACCGGCGGCGGCTCACCCTGGCCCAAGACAACCGACGAAACCAACCCAATTTCTGCCCTGTACCGAATTGGGTATTCCGGCGAGTCACCGGAAATTCCTTGTTTTTTATCCCATGAAGCAAAGGATTTCTTAGAGAAGTGCTTAAAGAGGAATCCAAGTGAGAGATGGACAGCCAATCAGCTACTGAATCACCCATTTTTAAGCTGGGAATTGAATTCCACATCCACAACACCAAGAAAAAAACAGGAAATTCATTCAGATTCTCCAACGAGTATCCTAGAACAGGGGATTTGGAGATCAATTGAAGACAGCAAATTGATTAGAGGCAATGGTTGGAGGAGGGAGACGGCAGCAGCAGAGCAGATCCGACGGCTGTGGATGGTTTCAGGAGAGCCGAGATGGAGAGAAGATGAGAATTGGATTACAATTAGAAGAAAAGAGAAAGTGGGTGATGAAAGGGAAATGATTGGTGGGTCAGAGTGTGAAGTGAAAAGATGTAGTAATAAAAGTAATAGTTGGGTTGAGGAACAGAGAGGTAGTGGCGGCAAAGAGTGGTTGGAAATGGAATTTGGGACTATTAGTTGTGCTGCTAACTGCCAGTGTGCCAATTAA 1191 48.53 MDWTRGHLIGHGSSATVFLATASSTGDVFAVKSAELSHSQSLQREQQFLSSFASPYVVSYRGFEVCREQSGVMMFNLFMEYFPNGSLADVIRRGGGRRLDEDTIGIYTRQLLMGLQYIHSKAVVHCDIKAHNILIGGDGVAKLADFGCARWATSQTDPIGGTPLFMAPEVARGEQQGFASDIWSIGCTIIEMATGGGSPWPKTTDETNPISALYRIGYSGESPEIPCFLSHEAKDFLEKCLKRNPSERWTANQLLNHPFLSWELNSTSTTPRKKQEIHSDSPTSILEQGIWRSIEDSKLIRGNGWRRETAAAEQIRRLWMVSGEPRWREDENWITIRRKEKVGDEREMIGGSECEVKRCSNKSNSWVEEQRGSGGKEWLEMEFGTISCAANCQCAN 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12165047 12166511 - CcPI632755_02g009820.1 Cco02g0982 171739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0982 396 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0982 396 Gene3D Transferase(Phosphotransferase) domain 1 2 323 - -
Cco02g0982 396 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 260 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco02g0982 396 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524(InterPro)
Cco02g0982 396 SUPERFAMILY Protein kinase-like (PK-like) 2 276 IPR011009 -
Cco02g0982 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g0982 396 PRINTS Tyrosine kinase catalytic domain signature 79 92 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g0982 396 PRINTS Tyrosine kinase catalytic domain signature 180 202 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g0982 396 PRINTS Tyrosine kinase catalytic domain signature 117 135 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g0982 396 SMART serkin_6 3 260 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0982 396 ProSiteProfiles Protein kinase domain profile. 3 260 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0982 396 CDD STKc_MAPKKK 2 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0982 Cco-Chr2:12165047 Cco09g1096 Cco-Chr9:10472057 5.00E-84 dispersed
Cco03g0064 Cco-Chr3:626731 Cco02g0982 Cco-Chr2:12165047 2.50E-56 transposed
Cco02g0207 Cco-Chr2:2013284 Cco02g0982 Cco-Chr2:12165047 2.60E-96 wgd
Cco02g0982 Cco-Chr2:12165047 Cco04g0284 Cco-Chr4:8445191 3.20E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86564 PF00069 Pkinase 6.00E-57 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0982 K20716 - csv:101208274 602.438