Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1012 ATGGCGGATTCTGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTGTCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTAAGCAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCGAAAGATGCAAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAAAGAAAGACAATCAACGGCGACGATTTGTTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCACTCAAGACTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGCTGGTGGTGGGACCGGCGGCAGTGGGACAAATAGTGGTGGTGGTGGAGTCAACTCTGGTACTGCTGGTGGTGGTGGTGGCGGCGGTGGATTTAACGGAGTGGGTGGAATTTATGGTGGGATGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGTGCTGGTGGATTTCACCATATGGGAATTGGCGGTGGGAAGGGTGGAAGTGGTGGTTCCGGCACCGGACACCGGTAG 618 52.91 MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGAGGGTGGSGTNSGGGGVNSGTAGGGGGGGGFNGVGGIYGGMMMMGHHQGGVYGAGGFHHMGIGGGKGGSGGSGTGHR 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12859534 12860151 - CcPI632755_02g010120.1 Cco02g1012 171769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1012 205 MobiDBLite consensus disorder prediction 1 21 - -
Cco02g1012 205 SUPERFAMILY Histone-fold 24 129 IPR009072 GO:0046982(InterPro)
Cco02g1012 205 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Cco02g1012 205 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Cco02g1012 205 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Cco02g1012 205 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Cco02g1012 205 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g1012 205 MobiDBLite consensus disorder prediction 115 154 - -
Cco02g1012 205 Gene3D Histone, subunit A 15 134 IPR009072 GO:0046982(InterPro)
Cco02g1012 205 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 127 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Cco02g1012 205 FunFam Nuclear transcription factor Y subunit B-3 16 139 - -
Cco02g1012 205 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1012 Cco-Chr2:12859534 Cco07g1001 Cco-Chr7:22986281 1.70E-46 dispersed
Cco02g1012 Cco-Chr2:12859534 Cco10g2051 Cco-Chr10:33891831 2.20E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58749 PF00808 CBFD_NFYB_HMF 2.00E-27 CL0012 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1012 K08065 - csv:101219076 255.758