Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g1012 | ATGGCGGATTCTGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTGTCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTAAGCAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCGAAAGATGCAAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAAAGAAAGACAATCAACGGCGACGATTTGTTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCACTCAAGACTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGCTGGTGGTGGGACCGGCGGCAGTGGGACAAATAGTGGTGGTGGTGGAGTCAACTCTGGTACTGCTGGTGGTGGTGGTGGCGGCGGTGGATTTAACGGAGTGGGTGGAATTTATGGTGGGATGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGTGCTGGTGGATTTCACCATATGGGAATTGGCGGTGGGAAGGGTGGAAGTGGTGGTTCCGGCACCGGACACCGGTAG | 618 | 52.91 | MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGAGGGTGGSGTNSGGGGVNSGTAGGGGGGGGFNGVGGIYGGMMMMGHHQGGVYGAGGFHHMGIGGGKGGSGGSGTGHR | 205 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 12859534 | 12860151 | - | CcPI632755_02g010120.1 | Cco02g1012 | 171769 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g1012 | 205 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cco02g1012 | 205 | SUPERFAMILY | Histone-fold | 24 | 129 | IPR009072 | GO:0046982(InterPro) | |
Cco02g1012 | 205 | PRINTS | CCAAT-binding transcription factor subunit A signature | 74 | 92 | - | - | |
Cco02g1012 | 205 | PRINTS | CCAAT-binding transcription factor subunit A signature | 93 | 111 | - | - | |
Cco02g1012 | 205 | PRINTS | CCAAT-binding transcription factor subunit A signature | 55 | 73 | - | - | |
Cco02g1012 | 205 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 27 | 91 | IPR003958 | - | |
Cco02g1012 | 205 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 58 | 74 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g1012 | 205 | MobiDBLite | consensus disorder prediction | 115 | 154 | - | - | |
Cco02g1012 | 205 | Gene3D | Histone, subunit A | 15 | 134 | IPR009072 | GO:0046982(InterPro) | |
Cco02g1012 | 205 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 10 | 127 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) | |
Cco02g1012 | 205 | FunFam | Nuclear transcription factor Y subunit B-3 | 16 | 139 | - | - | |
Cco02g1012 | 205 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1012 | Cco-Chr2:12859534 | Cco07g1001 | Cco-Chr7:22986281 | 1.70E-46 | dispersed | |
Cco02g1012 | Cco-Chr2:12859534 | Cco10g2051 | Cco-Chr10:33891831 | 2.20E-43 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58749 | PF00808 | CBFD_NFYB_HMF | 2.00E-27 | CL0012 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g1012 | K08065 | - | csv:101219076 | 255.758 |