Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1039 ATGCAAGCTTCTCAGCTTCATAGAGGTTCACATATGTCAAAGAGATTATGTTATCAGCCCCTTCAAGAAGTGGATGCCTACTGCTTCTCCCAATTTCAATCTTTAGGTCGCCACTTATATTCCAGTGCTGGCAACCAAAGAGCTCAGTTCAATGTTCAAGACATCGGTGATCGATACTGCACTCTGGAGTCGTCCTCGGGAAGCCACGGCTATGCAGCTCACAACTCAACGTCGACTGTCACTTTCTCACCCAATGGGAGTCCAGTATCGCAACAGGATTCTCGCTCAAATCCTTCTGATCAGCATAATTCCCCTGATAATACATATGGTTCTTCAGTAAGTGGATCCAGCATAACCAATGATATTAGTGATTTTAGGCACAAACTACTGGAATTGGAAACTGTGATGCTTGGTCCTGATTCTGATGTTAGTGATAGTTTTGATAGTATCTATCCGGAGGGAACAGACAATCCAGAGATGGGAACTTGGGGACAAGCGGTGGATGCTATTACTAAAAGAAACTTAAAAAAGATCCTGATAGCTTGTGCTAAAGCTGTATCAGATAATGATGCGTTGATGGCACAATGGCTTATGGATGAGTTGCGAAAGATGGTGTCGGTTTGCGGTGAACCGATGCAGAGGTTGGGAGCGTATATGCTGGAGGGGCTGGTTGCACGGTTAGCCTCCTCAGGCAGTTGCATCTATAAATCTTTGAGATGCAAGGAACCAGCAAGAGCGGAACTCCTCTCATATATGCACCTTCTTTATGAGGTTTGCCCCTACTTCAAATTTGGATACATGTCAGCAAATGGTGCCATTGCAGAAGCCATGAAAGATGAAGATCGAGTTCACATCATTGATTTCCAAATTTCTCAGGGTACTCAGTGGATCACTTTGATTCAAGCTTTTGCAGGCAGGCCTGGTGGGCCACCTCACATTCGTATAACCGGTATAGATGATCCTGCATCAGCTTATGCTCGTGGAGGCGGGCTAGATATCGTTGGGAAGAGACTTTCCAAGTTAGCGAAGTTATTTAATGTGCCATTTGAGTTTCACTCTGCTGCCATTTCTGGCTGTGATGTTCAGCAAAATAATCTGGGCATTCGACGAGGGGAGGCTTTAGCAGTGAATTTTGCATTCATGCTACACCATATGCCGGATGAGAGCGTAAGCACCGAAAATCATCGAGATAGGCTATTGAGGCTGGTTAAGGGTCTGTCTCCAAAGGTCGTGACACTTGTTGAACAAGAATCCAACACAAACACCGCTGCATTCTATCCCCGGTTCATCGAGACACTGGATTACTACAATGCCATGTTTGAATCAATTGATGTTACTCTTCCAAGACAGCACAAGGAGCGAATTAACATCGAGCAGCATTGTCTAGCCAGGGAAGTTGTCAACATACTAGCATGTGAGGGGGCCGAGAGAGTGGAACGACACGAGCTACTCGGAAAGTGGAGACTGCGGTTTGCAATGGCAGGATTTACACCTTACCCATTAAGCTCTTTGGTGAATGCTACCATCAAAACGTTATTAGATAACTATTCTAACAGCATCACCACCAAGATGCCAGCTGAAAACTCAATTCCATTTGATCGAGATGCAGAGCCTTTTGTTGAGGTCGATCCAACTGGAAGGTTTGGACGATATGACGATCTTCTTGGGTCTGGAGCGGTAAAGAGAGTTTATAGGGCATTCGATCAGGAGGAAGGAATAGAGGTTGCTTGGAATCAGGTTCGATTGAGAAATTTTAGTGGGGATCCAGTGTTCATCAACCGCTTGAGGTCTGAGGTTCAGCTGCTGAGTACTTTAAACAACAAATATATCATTGTTTGTTACAGTGTTTGGAATGACGACGAGCGTAATACGTTGAATTTCATTACCGAGGTGTGCACATCAGGAAATCTGAGGGATTATCGTAAGAAACATCGACATGTGTCAATTAAGGCCTTGAAAAAATGGTCAAAGCAAGTACTCGAGGGATTGGATTATCTTCATACTCATGAGCCTTGCATTATTCACAGAGACCTCAACTGCAGTAACATATTTGTCAATGGGAACATTGGCCAGGTTAAAATAGGCGATCTAGGGTTTGCAGCTATAGTCGGCAGGAGTCATGCTGCACATTCAATCATAGGCACACCAGAGTATATGGCACCAGAGCTGTATGAGGAAGACTACACAGAGATGGTGGATATATACTCCTTTGCGTTGTGTTTGCTTGAGATGGTTACGATGGAGATACCATACAGTGAATGTGATAGTGTTGCCAAGATATACAAAAAGGTCACAACTGGAATAAAGCCCCAAGCAATATCCAAAGTGACTGATGATGAAGTCAGGGCTTTCATTGAGAAGTGCATTGCACAGCCAAGGGCAAGACCTTCCGCTTCTGAACTTCTCAAAGATCCATTCTTTGACGAAGTGAGGGATGAAGATTCTGAACAGAGTTATTAA 2460 44.27 MQASQLHRGSHMSKRLCYQPLQEVDAYCFSQFQSLGRHLYSSAGNQRAQFNVQDIGDRYCTLESSSGSHGYAAHNSTSTVTFSPNGSPVSQQDSRSNPSDQHNSPDNTYGSSVSGSSITNDISDFRHKLLELETVMLGPDSDVSDSFDSIYPEGTDNPEMGTWGQAVDAITKRNLKKILIACAKAVSDNDALMAQWLMDELRKMVSVCGEPMQRLGAYMLEGLVARLASSGSCIYKSLRCKEPARAELLSYMHLLYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFAGRPGGPPHIRITGIDDPASAYARGGGLDIVGKRLSKLAKLFNVPFEFHSAAISGCDVQQNNLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFYPRFIETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFAMAGFTPYPLSSLVNATIKTLLDNYSNSITTKMPAENSIPFDRDAEPFVEVDPTGRFGRYDDLLGSGAVKRVYRAFDQEEGIEVAWNQVRLRNFSGDPVFINRLRSEVQLLSTLNNKYIIVCYSVWNDDERNTLNFITEVCTSGNLRDYRKKHRHVSIKALKKWSKQVLEGLDYLHTHEPCIIHRDLNCSNIFVNGNIGQVKIGDLGFAAIVGRSHAAHSIIGTPEYMAPELYEEDYTEMVDIYSFALCLLEMVTMEIPYSECDSVAKIYKKVTTGIKPQAISKVTDDEVRAFIEKCIAQPRARPSASELLKDPFFDEVRDEDSEQSY 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13628450 13636224 + CcPI632755_02g010390.1 Cco02g1039 171796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1039 819 Gene3D Transferase(Phosphotransferase) domain 1 632 813 - -
Cco02g1039 819 Gene3D Phosphorylase Kinase; domain 1 534 630 - -
Cco02g1039 819 Pfam Protein kinase domain 553 807 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1039 819 ProSiteProfiles Protein kinase domain profile. 549 807 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1039 819 SUPERFAMILY Protein kinase-like (PK-like) 542 808 IPR011009 -
Cco02g1039 819 MobiDBLite consensus disorder prediction 66 115 - -
Cco02g1039 819 FunFam probable serine/threonine-protein kinase WNK9 632 813 - -
Cco02g1039 819 FunFam Probable serine/threonine-protein kinase WNK1 534 630 - -
Cco02g1039 819 Pfam GRAS domain family 175 519 IPR005202 -
Cco02g1039 819 ProSiteProfiles GRAS family profile. 166 546 IPR005202 -
Cco02g1039 819 CDD STKc_WNK 547 807 - -
Cco02g1039 819 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 536 809 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1039 Cco-Chr2:13628450 Cco10g0442 Cco-Chr10:5210510 2.50E-170 dispersed
Cco02g1039 Cco-Chr2:13628450 Cco02g1766 Cco-Chr2:30431794 9.40E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58752 PF03514 GRAS 7.50E-124 CL0063 Cco TF
86565 PF03514 GRAS 7.50E-124 CL0063 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1039 K27748 - csv:101221914 999.579