Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1080 ATGGAGAGACAATATGGATCAAATAATTTGAGTCCATGTTCCTCCATTTCTAATCGGGTTCGACAAGAAACTGAAGATGTCACTAAAGATTTGAAGGAAGCCAATGAATTAATCGAAGCCATTGGGGCTTTTTCTGGGTTTCGAAAGACGCAATCCAAGGAGTGTTTGAATTTGGTTAGGAGATTGAAGATGCTTGTGCCTTTGTTGGAGGAGATTAGGGACCTTCATGATATGGTTCCTGCTGAGGCTTTGAGTTGTCATATTGCTCAGTTGAAAGAGGCTCTTGTATTGGCCAAAAGGTTACTGAAGAATTGCCACAATGGGAGTAAGATTTACCTGGCATTTGAGAATGAGGCTGTGATGGCAAGGTTTCATGGTGTTTATGACAAATTGAAGGAGGCCCTTGATGGGATACCTTATGATGAGCTTGGAGTCTCAGTTGAATTGAAAGAGCAAGTTGAGCTCATGTCGACACAACTCAAAAGAGCAAAGTGTAGGAAAGATACACAAGACATGGAACTAGCAATGGACATGATGGTTGTATTTTCTAAAAATGATGAGAGAAATGCCGACCCTGTTATACTTGAAAGATTGGCAAATAAATTGGAACTACGCAAAGTTGCAGATTTGGAAGCAGAAACTGTAGCTGTACAAAAATTAGTTAGACATAGAGGTGTGCCGAATTCTGAAAGTCTCCAGCAAATTATAGACCTTCTATGCAAGTTTAAACAAATTGCAGGTATGGACAATAATGTGGCTCCTGATGGTCCTGTTGCGTCGAAGTGTCTGCAACGATGTCAGTCTACAATAATCCCACATGAATTCCTCTGTCCCATTACCTTGGAAATCATGACAGATCCTGTCATTGTGGCTACTGGGCAGACTTATGACCGAGAAAGTATACAGAAATGGTTGAATTCGAACCACCGGACCTGCCCAAAAACAGGACAAACATTAGTGCATTTGTCACTAGCTCCAAATTATGCCCTCAAGAACCTCATTTTGCAGTGGTGTCAAAAATATAACTATGAATTGCCGAAGAAGGAAGTAGTTGCTGGAATGGGAGACACGCCGCCTGATCTCGCTAAAGAAATCTCGTCTTTAGTTCACAATCTATCATCGAGCCAGTTGGATGTCCAGAGAGAGGCTATCATCAAGATCCGTGTCCTTTCCAAGGAGAACCCTGAGAATAGAGTTTGGATCGCGAATAGTGGAGTCATCCCTCCCTTGGTTAAGCTTCTCTCATACCCAGATCTCAATTTCCAAGAACACACAGTCACCGCTCTATTGAACTTGTCTATTGACGACGCAAATAAAAGACTCATAGCAAGAGAAGGAGCTATTCCTGCTATCATAGAAATCCTGCAGCATGGAACAGAGGAGGCTAAGGAGAATTCTGCAGCTGCCCTGTTTAGCTTGTCAATGTTAGATGAAAATAAGGTTTTGATTGGATCTCTAAAGGGAATTCCGCCGTTAGTATTACTTCTTCGAGCCGGTACAATCCGAGGGAAGAAGGATGCTGCCACTGCACTCTTTAATCTGTCACTGAATCAAGCAAACAAGTCCCGAGCCATCAAAGCTGGTATCATACCGCCCCTTCTCGCTTTGCTCGAGGATAAGAACTTAGGAATGGTTGATGAAGCTTTATCAATCTTGTTACTCCTTGCATCACATCCCGAGGGACGGTCTGAGATTGGAAACAACTCTTTCATCGAAATTTTAGTTAACATCATAATAGATGGGACTCCGAAGAACAAGGAATGTGCTACATCGTTACTTCTCGAGCTGGGACGAAACAATTCACCTTCCATCTTGGTTGCACTGCAATTTGGTGTATATGAACATTTGGTAGAGCTCACAAGATGTGGGACAAGTCGAGCCCAGAGAAAAGCAACCTCACTTTTGCAGTATATGAGCAAGTGTGAACACATTCCCTGA 1938 42.57 MERQYGSNNLSPCSSISNRVRQETEDVTKDLKEANELIEAIGAFSGFRKTQSKECLNLVRRLKMLVPLLEEIRDLHDMVPAEALSCHIAQLKEALVLAKRLLKNCHNGSKIYLAFENEAVMARFHGVYDKLKEALDGIPYDELGVSVELKEQVELMSTQLKRAKCRKDTQDMELAMDMMVVFSKNDERNADPVILERLANKLELRKVADLEAETVAVQKLVRHRGVPNSESLQQIIDLLCKFKQIAGMDNNVAPDGPVASKCLQRCQSTIIPHEFLCPITLEIMTDPVIVATGQTYDRESIQKWLNSNHRTCPKTGQTLVHLSLAPNYALKNLILQWCQKYNYELPKKEVVAGMGDTPPDLAKEISSLVHNLSSSQLDVQREAIIKIRVLSKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDDANKRLIAREGAIPAIIEILQHGTEEAKENSAAALFSLSMLDENKVLIGSLKGIPPLVLLLRAGTIRGKKDAATALFNLSLNQANKSRAIKAGIIPPLLALLEDKNLGMVDEALSILLLLASHPEGRSEIGNNSFIEILVNIIIDGTPKNKECATSLLLELGRNNSPSILVALQFGVYEHLVELTRCGTSRAQRKATSLLQYMSKCEHIP 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14726512 14729829 + CcPI632755_02g010800.1 Cco02g1080 171837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1080 645 MobiDBLite consensus disorder prediction 1 21 - -
Cco02g1080 645 FunFam RING-type E3 ubiquitin transferase 353 644 - -
Cco02g1080 645 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco02g1080 645 FunFam RING-type E3 ubiquitin transferase 27 141 - -
Cco02g1080 645 SMART arm_5 394 434 IPR000225 GO:0005515(InterPro)
Cco02g1080 645 SMART arm_5 435 475 IPR000225 GO:0005515(InterPro)
Cco02g1080 645 SMART arm_5 476 516 IPR000225 GO:0005515(InterPro)
Cco02g1080 645 SMART arm_5 517 557 IPR000225 GO:0005515(InterPro)
Cco02g1080 645 SMART arm_5 600 640 IPR000225 GO:0005515(InterPro)
Cco02g1080 645 SMART arm_5 558 598 IPR000225 GO:0005515(InterPro)
Cco02g1080 645 Gene3D - 359 504 IPR011989 -
Cco02g1080 645 FunFam RING-type E3 ubiquitin transferase 269 344 - -
Cco02g1080 645 Pfam U-box domain 271 340 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco02g1080 645 SMART Ubox_2 274 337 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco02g1080 645 Pfam Armadillo/beta-catenin-like repeat 394 433 IPR000225 GO:0005515(InterPro)
Cco02g1080 645 Pfam Armadillo/beta-catenin-like repeat 477 515 IPR000225 GO:0005515(InterPro)
Cco02g1080 645 Pfam Armadillo/beta-catenin-like repeat 435 474 IPR000225 GO:0005515(InterPro)
Cco02g1080 645 Pfam Armadillo/beta-catenin-like repeat 517 554 IPR000225 GO:0005515(InterPro)
Cco02g1080 645 Coils Coil 146 166 - -
Cco02g1080 645 PANTHER U BOX DOMAIN-CONTAINING 49 640 - -
Cco02g1080 645 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 345 IPR013083 -
Cco02g1080 645 CDD MLKL_NTD 53 163 - -
Cco02g1080 645 SUPERFAMILY ARM repeat 365 639 IPR016024 -
Cco02g1080 645 CDD RING-Ubox_PUB 272 324 IPR045210 -
Cco02g1080 645 Gene3D - 505 644 IPR011989 -
Cco02g1080 645 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 405 447 IPR000225 GO:0005515(InterPro)
Cco02g1080 645 SUPERFAMILY RING/U-box 271 345 - -
Cco02g1080 645 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 446 488 IPR000225 GO:0005515(InterPro)
Cco02g1080 645 Gene3D - 29 139 IPR036537 GO:0007166(InterPro)
Cco02g1080 645 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 487 529 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1080 Cco-Chr2:14726512 Cco03g0164 Cco-Chr3:1593850 7.70E-82 dispersed
Cco02g1080 Cco-Chr2:14726512 Cco02g2163 Cco-Chr2:34366997 7.90E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1080 - - - 0.0