Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1110 ATGCCGAAGGGTTTGAAGAGTAAATGTCAGTCTACGTCTCATCAGCTTTTGAAGGAAAAAGCAAAGAACCGTGTTAATGACCTTCAAGGGATATTCACTAATCTTCAAAACGCAAGAAAGGAGAGTCGTACAACTGACGTTGCTGTTTTGGAGGAGCAAGTCCATCAGATGCTCAGGGAGTGGAATGCTGAGCTTAATGAACCGTCACCTGCCTCTTCATTTGTTGAGGGTAGTCTTGGATCATTCTCGCAAGAGTTAGCCCGTCTTCTTGAGCATTGTGATGAGGAAGATGATGCAACTAGTATATTGGCTGAACCAAAGGCTGAGACTGAGCTCCATTGCGTTCTTGCCAGCAATCCGTCAAATTGTGTACAGGATGGTTTTTGTATTCCGGAGCTCCAACAGGATAGTTTTCTTGGGTTTGAGGAGTGCAAAGTCTCGCCTCCAGATCTACAGAATTATTCGTTTTACAAATTGGACATGGCTACTCAGTCTATTTGTCAAAGTTTCAAATTAGATCAAAACTTCGAGCAGACAACAATGGCCAGTAAGGATGATGTGTCTACTTTGAACTGCCATATATTGAACTCACGTCCAGAGTTCGACTATGGGGTTCTTATTGGGGCATCTGATGTGGGAGACTTTAGTCAGGACACAAAGCCCAGTATTCTCCCAAATATCTCACCCCCACCATCTGCTTTTATGGGCCCAATATGTGCTCTATGGGATTGTTTCAGACCTGCTCAAGGATCTAAATGGTGTCAGGATTATTGCAGTAGCTGTCATTCTGTTCTTGCTATAAACGAAGGCCTTCCTGGAATGATTCCAATATTGCGCCCTGGGGGAATTGGCTTTAAGGATGGTCCTTTGTTTGCTGCTCTTCATGCAAAGACACAGGCCAAAGAAGTTGGAATACCCATATGTGATGGTGCTGCAACAAGGAAATCTCCATGGAATGCTCCTGAGCTTTTTGATATTACATTTCTTGAGGGGGAGACAATCAGGGAATGGCTCTACTTCGACAAGCCTAGAAGAGCCTTTGAGAGTGGCAATCGAAGGCAAAGGTCATTGCCGGATTATAGTGGCCGTGGTTGGCATGAATCAAGGAAGCTGGTGATGAAGGAGTTTGGTGGTCAGAAGAAGTCTTATTACATGGATCCACAGCCATCAAGCTCTCTTGAATGGCATTTGTACGAATATGATATCACCAATTATGATTCATTCGCATTATATAGGCTGGAACTCAAGCATGTTGATGCAAAGAAGAGTCCAAAAGGAAAACTGGCAGCTGATCCTCTGGCTGATCTGCAGAAGAAGATGGGAAGGCTTACTGCAGAGGGCCCTGTTGAGCTTGGACAACCAGTTAAAGGTAAGATTACAACAAAGACGAATACTAAAAAGCTTGATACTGCAAACATCAACCTTGCTCCGCATCATCAGAATATGACGAACACCAACTGA 1461 44.01 MPKGLKSKCQSTSHQLLKEKAKNRVNDLQGIFTNLQNARKESRTTDVAVLEEQVHQMLREWNAELNEPSPASSFVEGSLGSFSQELARLLEHCDEEDDATSILAEPKAETELHCVLASNPSNCVQDGFCIPELQQDSFLGFEECKVSPPDLQNYSFYKLDMATQSICQSFKLDQNFEQTTMASKDDVSTLNCHILNSRPEFDYGVLIGASDVGDFSQDTKPSILPNISPPPSAFMGPICALWDCFRPAQGSKWCQDYCSSCHSVLAINEGLPGMIPILRPGGIGFKDGPLFAALHAKTQAKEVGIPICDGAATRKSPWNAPELFDITFLEGETIREWLYFDKPRRAFESGNRRQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPSSSLEWHLYEYDITNYDSFALYRLELKHVDAKKSPKGKLAADPLADLQKKMGRLTAEGPVELGQPVKGKITTKTNTKKLDTANINLAPHHQNMTNTN 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15761534 15763981 - CcPI632755_02g011100.1 Cco02g1110 171867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1110 486 PANTHER TRANSCRIPTION FACTOR VOZ1 1 477 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(InterPro)|GO:0048578(PANTHER)
Cco02g1110 486 Coils Coil 18 38 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1110 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1110 Cco-Chr2:15761534 Cco04g2121 Cco-Chr4:35065679 1.50E-143 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco04g2121 . 190 670 VOZ-9 Transcription Factor Family AT1G28520 72.1 9.5e-202 699.9
Cco02g1110 . 6 450 VOZ-9 Transcription Factor Family AT1G28520 58.0 3.8e-134 475.3
Cco04g2121 . 215 610 VOZ-9 Transcription Factor Family AT2G42400 51.4 1.1e-103 374.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005492 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 5 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58757 None None None None Cco TF