Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g1121 | ATGATTGAGAAAATGGCGGACGACGAAATCTCAGACTGTTTTCTCCAAATCCCGCTCACCGGATCCAACCCTTCTCTTCTCAAGAAGAAAAGAAACCTCCCCGGAACTCCAGATCCGGAAGCAGAAGTGATAGCGTTGTCGCCAAAGACGTTGATGGCGACGAACCGATTCGTGTGTGAAATATGTGGAAAAGGGTTTCAGAGAGACCAAAATTTGCAACTACACAGACGAGGACATAACCTTCCATGGAAGCTAAAGCAAAGAAGTAGTAAAGAACCAAAGAAGAGAGTGTATGTGTGTCCTGAGAAAAGCTGTGTTCATCACCATCCATCAAGAGCTTTGGGAGATCTTACAGGGATAAAAAAGCACTTTTGTAGAAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAATGCTCAAAGAGATACGCTGTGCAATCTGATTGGAAAGCACACTCCAAAACTTGTGGTACTAGAGAATACAAATGTGATTGTGGAACTCTATTTTCAAGGAGAGATAGCTTCATAACTCACAGAGCATTCTGCGATGCATTAGCAGAAGAAACAGCAAGAGTAAAAGCAGGAACAACAATAAGCAATAATTTCAACTATAATTTAATGGGAGCGGGAAGCTGCAGAGATGATGAAACAGGGTTATTCATGGCTCAACAGTTGGGTTCAATTTTCAAGCCAATTTCAGTGAAGGAAGCAACAATGGCAATAAGCAGCAGTGGGGTTTCCTTAAGAAGCAATAATAATTACAACAATCTTCAAATGATTGGAGGGATGATGTACTGCGAAGATCCACTTTGGGGAAGCTCAGTACAAATGGGTGATTATAATCAAAATCAGGGGTTATTGATGAATAATGGGGGAGGAGTTTCTTCATTATACAGCCATCAGTTACAACAACTGAATCAAACCCAGATGGGAAATATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTGAAATTGGGCCAACTTCTTCTACTACATCTGCCCCATCACTACTACTACTACAACAACAGGGGTTTTTGTTCAATAATAATGGGACTCAGTATTGTAATTCTTCTAGTACTACAAATCCAATTGTTGTTGAGAATGGGAATAATGAGATGTACACTGCAAAACGGCGTCGTACTGAGAGTGAAATTGAGTGTGGAAGTGGAAGTGGAACAATGGGACCAGGAACAGGAGCAGGGGAGACAAGGGATTTTCTCGGAGTTGGTGCCAAAACTATATGTCACGCTTCAGCATCAATCAACGGATGGATTTAG | 1275 | 41.65 | MIEKMADDEISDCFLQIPLTGSNPSLLKKKRNLPGTPDPEAEVIALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPKKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVKAGTTISNNFNYNLMGAGSCRDDETGLFMAQQLGSIFKPISVKEATMAISSSGVSLRSNNNYNNLQMIGGMMYCEDPLWGSSVQMGDYNQNQGLLMNNGGGVSSLYSHQLQQLNQTQMGNMSATALLQKAAEIGPTSSTTSAPSLLLLQQQGFLFNNNGTQYCNSSSTTNPIVVENGNNEMYTAKRRRTESEIECGSGSGTMGPGTGAGETRDFLGVGAKTICHASASINGWI | 424 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 16329908 | 16331371 | + | CcPI632755_02g011210.1 | Cco02g1121 | 171878 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g1121 | 424 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 111 | 190 | - | - | |
Cco02g1121 | 424 | SMART | c2h2final6 | 133 | 153 | IPR013087 | - | |
Cco02g1121 | 424 | SMART | c2h2final6 | 57 | 79 | IPR013087 | - | |
Cco02g1121 | 424 | Pfam | Zinc finger, C2H2 type | 57 | 79 | IPR013087 | - | |
Cco02g1121 | 424 | Gene3D | Classic Zinc Finger | 53 | 80 | - | - | |
Cco02g1121 | 424 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 159 | 197 | - | - | |
Cco02g1121 | 424 | FunFam | protein indeterminate-domain 12-like | 36 | 104 | - | - | |
Cco02g1121 | 424 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 57 | 79 | IPR013087 | - | |
Cco02g1121 | 424 | Gene3D | Classic Zinc Finger | 91 | 181 | - | - | |
Cco02g1121 | 424 | SUPERFAMILY | beta-beta-alpha zinc fingers | 56 | 153 | IPR036236 | - | |
Cco02g1121 | 424 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 25 | 412 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cco02g1121 | 424 | MobiDBLite | consensus disorder prediction | 379 | 398 | - | - | |
Cco02g1121 | 424 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 59 | 79 | IPR013087 | - | |
Cco02g1121 | 424 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 132 | 156 | - | - | |
Cco02g1121 | 424 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 94 | 128 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0254 | Cco-Chr2:2358187 | Cco02g1121 | Cco-Chr2:16329908 | 4.30E-105 | dispersed | |
Cco02g1121 | Cco-Chr2:16329908 | Cco09g0708 | Cco-Chr9:6393795 | 5.60E-89 | dispersed | |
Cco02g1121 | Cco-Chr2:16329908 | Cco04g1089 | Cco-Chr4:26345648 | 6.60E-90 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58758 | PF00096 | zf-C2H2 | 0.0018 | CL0361 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g1121 | K25870 | - | csv:101211656 | 632.098 |