Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1121 ATGATTGAGAAAATGGCGGACGACGAAATCTCAGACTGTTTTCTCCAAATCCCGCTCACCGGATCCAACCCTTCTCTTCTCAAGAAGAAAAGAAACCTCCCCGGAACTCCAGATCCGGAAGCAGAAGTGATAGCGTTGTCGCCAAAGACGTTGATGGCGACGAACCGATTCGTGTGTGAAATATGTGGAAAAGGGTTTCAGAGAGACCAAAATTTGCAACTACACAGACGAGGACATAACCTTCCATGGAAGCTAAAGCAAAGAAGTAGTAAAGAACCAAAGAAGAGAGTGTATGTGTGTCCTGAGAAAAGCTGTGTTCATCACCATCCATCAAGAGCTTTGGGAGATCTTACAGGGATAAAAAAGCACTTTTGTAGAAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAATGCTCAAAGAGATACGCTGTGCAATCTGATTGGAAAGCACACTCCAAAACTTGTGGTACTAGAGAATACAAATGTGATTGTGGAACTCTATTTTCAAGGAGAGATAGCTTCATAACTCACAGAGCATTCTGCGATGCATTAGCAGAAGAAACAGCAAGAGTAAAAGCAGGAACAACAATAAGCAATAATTTCAACTATAATTTAATGGGAGCGGGAAGCTGCAGAGATGATGAAACAGGGTTATTCATGGCTCAACAGTTGGGTTCAATTTTCAAGCCAATTTCAGTGAAGGAAGCAACAATGGCAATAAGCAGCAGTGGGGTTTCCTTAAGAAGCAATAATAATTACAACAATCTTCAAATGATTGGAGGGATGATGTACTGCGAAGATCCACTTTGGGGAAGCTCAGTACAAATGGGTGATTATAATCAAAATCAGGGGTTATTGATGAATAATGGGGGAGGAGTTTCTTCATTATACAGCCATCAGTTACAACAACTGAATCAAACCCAGATGGGAAATATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTGAAATTGGGCCAACTTCTTCTACTACATCTGCCCCATCACTACTACTACTACAACAACAGGGGTTTTTGTTCAATAATAATGGGACTCAGTATTGTAATTCTTCTAGTACTACAAATCCAATTGTTGTTGAGAATGGGAATAATGAGATGTACACTGCAAAACGGCGTCGTACTGAGAGTGAAATTGAGTGTGGAAGTGGAAGTGGAACAATGGGACCAGGAACAGGAGCAGGGGAGACAAGGGATTTTCTCGGAGTTGGTGCCAAAACTATATGTCACGCTTCAGCATCAATCAACGGATGGATTTAG 1275 41.65 MIEKMADDEISDCFLQIPLTGSNPSLLKKKRNLPGTPDPEAEVIALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPKKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVKAGTTISNNFNYNLMGAGSCRDDETGLFMAQQLGSIFKPISVKEATMAISSSGVSLRSNNNYNNLQMIGGMMYCEDPLWGSSVQMGDYNQNQGLLMNNGGGVSSLYSHQLQQLNQTQMGNMSATALLQKAAEIGPTSSTTSAPSLLLLQQQGFLFNNNGTQYCNSSSTTNPIVVENGNNEMYTAKRRRTESEIECGSGSGTMGPGTGAGETRDFLGVGAKTICHASASINGWI 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16329908 16331371 + CcPI632755_02g011210.1 Cco02g1121 171878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1121 424 FunFam protein indeterminate-domain 5, chloroplastic-like 111 190 - -
Cco02g1121 424 SMART c2h2final6 133 153 IPR013087 -
Cco02g1121 424 SMART c2h2final6 57 79 IPR013087 -
Cco02g1121 424 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Cco02g1121 424 Gene3D Classic Zinc Finger 53 80 - -
Cco02g1121 424 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 159 197 - -
Cco02g1121 424 FunFam protein indeterminate-domain 12-like 36 104 - -
Cco02g1121 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cco02g1121 424 Gene3D Classic Zinc Finger 91 181 - -
Cco02g1121 424 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Cco02g1121 424 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 412 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco02g1121 424 MobiDBLite consensus disorder prediction 379 398 - -
Cco02g1121 424 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cco02g1121 424 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 132 156 - -
Cco02g1121 424 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 94 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0254 Cco-Chr2:2358187 Cco02g1121 Cco-Chr2:16329908 4.30E-105 dispersed
Cco02g1121 Cco-Chr2:16329908 Cco09g0708 Cco-Chr9:6393795 5.60E-89 dispersed
Cco02g1121 Cco-Chr2:16329908 Cco04g1089 Cco-Chr4:26345648 6.60E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58758 PF00096 zf-C2H2 0.0018 CL0361 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1121 K25870 - csv:101211656 632.098