Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1143 ATGGATGGATTTAGGAGTAACGACAACAAACAAGGCGTTGAAAGGCATTCCCGCGCCGAGATGGGGTCATTAGGCGAGAAAACCATACTGGAATTTGAAGATGAGAGCCTTGTTAGTCCTGTATCATTAAATAGAAAGAACTTTTCTATTGAGGGATCTATCCATAGTTCTACGTTGGGTGGTGGTTCGCAGAAACTTAGTTACAGTAACATGAAGAACAGGGTATTTGGCAGCATTAAGATTGTCGTCTTCTCTGCTAAAATAAACCTTCTCATGCCTTTTGGGCCTTTAGCAATAATAGTCAGCACTTTATCTGGTCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTTGCTGAGCGTTTGGGATATGCAACTGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCTACAGAATTGATAATATCAATATATGCATTGCGAAGAGGAATGATCCGTGTTGTTCAACAGTCATTATTAGGTTCAATTTTGTCTAATATGTTATTAGTACTTGGATGTGCCTTCTTTGCTGGTGGAGTTGTGGTTTCTAAGAGAGAGCAGGTCTTCAGTAAGGCAGCTGCTACAGTGAATTCTGGACTGCTGTTAATGGCGGTAATGGGACTTCTATTTCCTGCTGTCCTTCGTTCGACACACACAGAGTTGCACTCTGGAAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCGGCATTATGTTGGTTGCATATGCTGCCTATCTTGTTTTTCAGTTGAAAAGTGATAAGAACTTATATCTCCCGGTTGACGAGGGGGATAATGAAGGGAGTTCTTCTGATGATGAAGAAGCTCCTGAGATTACCATGTGGGAATCCATTATTTGGTTGTCTATCTTGACCATTTGGATCTCCGTCCTCTCCGAATACTTGGTTAATGCAATCGAGGGGGCATCGGTTGCAATGAACATACCAGTAGCATTCATTAGTGTTATCCTACTACCTATTGTTGGGAATGCTGCAGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGACAAGCTTGACATTTCTTTGGGAGTCGCAATAGGATCATCGACACAGATATCTATGTTTGGGATTCCTTTTTGTGTGGTCATTGGTTGGATCATGGGATGTCCTATGGACTTGAATTTTCAGCTTTTTGAAACCGCCACGCTTTTCATCACGGTCATTGTTGTGGCCTTCATGTTGCAGGATGGAACTTCTAATTACCTCAAAGGACTAATGCTTATTCTCTGCTACCTGATAGTAGCTGCGAGTTTCTTTGTACATATTGACCCAGCATCAGTTGGTAAGCTTTCACTCCCTTTGCTACAACTGGGAAACTGCAAACAAAATGGAAGCTATTCAATGCCCTACAAAACTAACAGTCTAACCATGAAAATCAAAACTTTTACACAGGAGACAAGACCCGAAAACCTGGTGTATGAAAGGCAAGGGACGACTCAAAGAAATGAATCTGCCTGCACTAGTACTCTCTTGAAGATGGGATTGACCGAAGCTCGAGGTTCACTCCATTGCTGTATAGTTCTGAATTCAGGCTACAACCTTGTTCAGAAATCATTTTTCCATGTTTTGGGACAACCAATGGCAATAGATGTTTCCTTGATTCTTCCAGTCGTTGGTGCTGATCTTGTTTTATCATTGCAAGCTTTGGCAAATACTCACAACTTAGCAACTAGGAATGCTAGATATTGA 1755 41.94 MDGFRSNDNKQGVERHSRAEMGSLGEKTILEFEDESLVSPVSLNRKNFSIEGSIHSSTLGGGSQKLSYSNMKNRVFGSIKIVVFSAKINLLMPFGPLAIIVSTLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGVVVSKREQVFSKAAATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVDEGDNEGSSSDDEEAPEITMWESIIWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASVGKLSLPLLQLGNCKQNGSYSMPYKTNSLTMKIKTFTQETRPENLVYERQGTTQRNESACTSTLLKMGLTEARGSLHCCIVLNSGYNLVQKSFFHVLGQPMAIDVSLILPVVGADLVLSLQALANTHNLATRNARY 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19353910 19358681 + CcPI632755_02g011430.1 Cco02g1143 171900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1143 584 Pfam Sodium/calcium exchanger protein 298 440 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g1143 584 Pfam Sodium/calcium exchanger protein 109 265 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g1143 584 NCBIfam calcium/proton exchanger 92 441 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cco02g1143 584 Gene3D - 283 442 IPR044880 -
Cco02g1143 584 Gene3D - 138 278 IPR044880 -
Cco02g1143 584 FunFam Vacuolar cation/proton exchanger 286 442 - -
Cco02g1143 584 FunFam Vacuolar cation/proton exchanger 139 278 - -
Cco02g1143 584 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 64 446 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1143 Cco-Chr2:19353910 Cco10g0404 Cco-Chr10:4771914 1.90E-156 dispersed
Cco02g1143 Cco-Chr2:19353910 Cco04g0890 Cco-Chr4:24556687 1.30E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1143 K07300 - csv:101215915 835.484