Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1154 ATGGAATTTGCTCCATTTTACATGGGAAATGCTTTCTCGGTTTTCAGAATTCACTTGAAAGGTTTTGAATTGTACAAAATTCCCATTTGTGGGAGCTTCTGCTTCTGCGTACTTCACCTACTTCAAAGCTGTTCTGTTCACAAACTAAAAAGAGACATTGATAATGGAGGAGAAGCGAGAAAAAGCTGGCAATCTTCTTCCAAACGGGCAATATCTACAGAAGCAAACATAGCAGAAAGGGCGGCGGAATGGGGACTGGTGGTGGAGACAAACGTGGAAGAAGGCAGTTTCAAGGCCATCGTGGGGAGAGCATCAGGTGAAGGAGGGGGCAGCAAAAGATCATCAGAGAAAATCAGTGGCACAGGAAGAACTTCAAGCTTTGGCAAGGAAACCTCTGGAGTTTTCCCAAGGGTATCACAAGAGTTGAAGGACGCTCTGGCTTCTTTAGAACAGACATTTGTAGTCTCTGATGCCACCAAACCAGACTGCCCCATCATGTATGCGAGCAGTGGCTTCTTTGGCATGACTGGTTATGCTTCAGAGGAAGTCATTGGAAGGAACTGCCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGACAAAATCCGATATGCAGTGAAAAACGGCAAAAGCTACTGCGGGAGGCTTTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAGTCACACCTATCAAGGATGACAATGGCAATACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAATACACAGAAGGCATAAATGATAAAGCATTACGACCGAATGGGTTGCCAAAGTCGTTAATCCGCTATGATGCTCGCCAGAAGGAAAAGGCAATGGATTCCATCACAGAGGTCGTTCAGACTGTGAAGAATCCTCGATCTCATAATCGAGCTATGAGTCATGACACTACCAGAAAAAAAGAAGATTTGGAAAAGTTCAATCTTGACTATGTTCTTCCAAAGTCGGTTGAAGCTGCAAATGATACACCGGGTAGACAAACTCCTCAACAGGACCTCAAAGATGATGGGTTAGGAAAGAAACCTAGGTTATCAAGTCGAGTTTCTCTAATGGGTTTCAAAGGGAAATCTCTAAGCAGTTCAAGGAAGCTTGAAGTAACAGCCTTTGAACCAGAAATTTTGATGTCCGACGAAGTAGAACGGACTGATAGTTGGGACCGTGTTGAAAGAGAAAAGGATATTCGCCAAGGAATTGATTTAGCTACCACATTGGAGAGAATTGAGAAAAATTTTGTCATTACTGATCCAAGGCTTCCTGATAATCCAATTATATTTGCATCCGACAGCTTTCTTGAATTGACGGAATATACTCGTGAGGAAATTTTGGGACGAAACTGTCGGTTTCTTCAAGGGCCTGAAACAGATCAAGAAACTGTCTCAAAGATAAGGGATGCAATTAGGGAACAAAGAGAAATAACTGTTCAGTTGATCAACTATACCAAGACTGGTAAAAAGTTCTGGAATTTATTCCACTTGCAACCAATGCGTGATGAAACGGGAGAGCTTCAATATTTTATTGGTGTACAACTAGATGGAAGTGGTCACGTGGAACCTTTGCAAAACCGCCTTTCTGAGACAGCAGAGCTGCAAAGTGCCAAGCTGGTTAAAGCCACTGCAGAGAATGTTGATGAGGCTGTTCGTGAACTTCCCGATGCCAACTTGAGACCAGAAGATTTGTGGGCACTTCATTCTCAACCAGTCTTCCCAAGGCCTCACAAGAAGCACAATTCTTCTTGGAGTGCTATACAGAAGATTATCCGACGTGGTGAAAAAATTGGACTCCAACATTTTAAGCCAATTAAACCACTGGGTTGTGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAAGCGAACTTTATGCCTTGAAAGCAATGGAGAAATCAGCACTTTTGAATCGAAACAAGGTCCACAGAGCATGCATTGAAAGGCAAATCATTGCGCTTCTGGATCATCCTTTTCTTCCAACACTATACACTTCATTTGAGACCCCTACACACGTTTGTTTGATAACAGACTTCTGCCCTGGTGGGGAGTTATTCGCATTGCTTGATAAGCAACCAATGAAAATGTTTAAAGAGGATTCTGCAAGGTTCTATGCTGCAGAGGTCGTCATTGGCTTGGAATATCTTCACTGTCTAGGAATCATTTACCGGGATTTGAAGCCTGAAAATATTCTTCTCCAGAAGGATGGGCATGTTACGCTTGCTGACTTCGATTTATCACTTGTAACATCCTGCAAACCGCAGATTGTGAAGTATCCATTGCATCATGGTAGAAGGAGATCTCGAAGTCAACCACCACCAGTATTTGTTGCAGAGCCGATCACGCAATCAAATTCTTTTGTTGGAACTGAAGAGTATATTGCTCCTGAAATTATAACAGGGGAAGGCCACAGCAGCTCTATCGATTGGTGGGCTCTTGGTATATTGTTATATGAGATGCTTTATGGTCGCACGCCTTTCAGAGGAAAGAACAGGCAGAAGACTTTTGGTAACATCTTGCACAAAGATCTCACTTTCCCAAGTAGCATTCAGGTGAGTCTTGCAGCAAGGCAGCTGATCAATGCATTGCTACAAAGAGACCCCGCCAGACGTTTAGGATCAAGTACAGGTGCAAATGAAATCAAACAGCACCCCTTTTTCCAATCAATCAACTGGCCATTGATCCGGTGTATGGTCCCGCCACCATTAGAATCACCTCTTCACCTAACTGGAAAAGATGGAACAACCAAGAACATAAACTGGGAAGATGATGGTGTGCTTAGCTCAATGGATATGGATTTCTTCTGA 2841 43.15 MEFAPFYMGNAFSVFRIHLKGFELYKIPICGSFCFCVLHLLQSCSVHKLKRDIDNGGEARKSWQSSSKRAISTEANIAERAAEWGLVVETNVEEGSFKAIVGRASGEGGGSKRSSEKISGTGRTSSFGKETSGVFPRVSQELKDALASLEQTFVVSDATKPDCPIMYASSGFFGMTGYASEEVIGRNCRFLQGPETDQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGMQVEVSKYTEGINDKALRPNGLPKSLIRYDARQKEKAMDSITEVVQTVKNPRSHNRAMSHDTTRKKEDLEKFNLDYVLPKSVEAANDTPGRQTPQQDLKDDGLGKKPRLSSRVSLMGFKGKSLSSSRKLEVTAFEPEILMSDEVERTDSWDRVEREKDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSGHVEPLQNRLSETAELQSAKLVKATAENVDEAVRELPDANLRPEDLWALHSQPVFPRPHKKHNSSWSAIQKIIRRGEKIGLQHFKPIKPLGCGDTGSVHLVELLGTSELYALKAMEKSALLNRNKVHRACIERQIIALLDHPFLPTLYTSFETPTHVCLITDFCPGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLVTSCKPQIVKYPLHHGRRRSRSQPPPVFVAEPITQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIQVSLAARQLINALLQRDPARRLGSSTGANEIKQHPFFQSINWPLIRCMVPPPLESPLHLTGKDGTTKNINWEDDGVLSSMDMDFF 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19883135 19897437 - CcPI632755_02g011540.1 Cco02g1154 171911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1154 946 MobiDBLite consensus disorder prediction 105 132 - -
Cco02g1154 946 ProSiteProfiles PAC domain profile. 484 538 IPR000700 -
Cco02g1154 946 PANTHER FLIPPASE KINASE 1-RELATED 562 917 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco02g1154 946 CDD PAS 425 525 IPR000014 -
Cco02g1154 946 SMART pas_2 140 209 IPR000014 -
Cco02g1154 946 SMART pas_2 412 481 IPR000014 -
Cco02g1154 946 MobiDBLite consensus disorder prediction 333 357 - -
Cco02g1154 946 ProSitePatterns Serine/Threonine protein kinases active-site signature. 732 744 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g1154 946 SMART serkin_6 611 898 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1154 946 ProSiteProfiles PAS repeat profile. 138 211 IPR000014 -
Cco02g1154 946 FunFam Putative LOV domain-containing protein 695 910 - -
Cco02g1154 946 ProSiteProfiles PAS repeat profile. 410 483 IPR000014 -
Cco02g1154 946 FunFam Putative LOV domain-containing protein 152 308 - -
Cco02g1154 946 SUPERFAMILY PYP-like sensor domain (PAS domain) 426 525 IPR035965 -
Cco02g1154 946 Pfam Protein kinase domain 614 898 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1154 946 NCBIfam PAS domain S-box protein 165 255 IPR000014 -
Cco02g1154 946 NCBIfam PAS domain S-box protein 435 525 IPR000014 -
Cco02g1154 946 FunFam LOV domain-containing protein 610 694 - -
Cco02g1154 946 Gene3D Phosphorylase Kinase; domain 1 610 694 - -
Cco02g1154 946 MobiDBLite consensus disorder prediction 112 132 - -
Cco02g1154 946 Pfam PAS domain 433 525 IPR000014 -
Cco02g1154 946 Pfam PAS domain 159 255 IPR000014 -
Cco02g1154 946 CDD STKc_phototropin_like 609 917 - -
Cco02g1154 946 ProSiteProfiles Protein kinase domain profile. 611 898 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1154 946 SUPERFAMILY Protein kinase-like (PK-like) 588 923 IPR011009 -
Cco02g1154 946 ProSiteProfiles PAC domain profile. 212 266 IPR000700 -
Cco02g1154 946 SUPERFAMILY PYP-like sensor domain (PAS domain) 159 251 IPR035965 -
Cco02g1154 946 Gene3D PAS domain 399 563 - -
Cco02g1154 946 SMART pac_2 215 257 IPR001610 -
Cco02g1154 946 SMART pac_2 487 529 IPR001610 -
Cco02g1154 946 FunFam LOV domain-containing protein 399 563 - -
Cco02g1154 946 Gene3D Transferase(Phosphotransferase) domain 1 695 914 - -
Cco02g1154 946 Gene3D PAS domain 152 322 - -
Cco02g1154 946 CDD PAS 165 254 IPR000014 -
Cco02g1154 946 ProSitePatterns Protein kinases ATP-binding region signature. 617 640 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1154 Cco-Chr2:19883135 Cco10g1370 Cco-Chr10:26715631 3.50E-99 dispersed
Cco02g2217 Cco-Chr2:34759185 Cco02g1154 Cco-Chr2:19883135 4.0e-311 transposed
Cco05g2410 Cco-Chr5:32603419 Cco02g1154 Cco-Chr2:19883135 4.70E-48 transposed
Cco02g0328 Cco-Chr2:2989299 Cco02g1154 Cco-Chr2:19883135 7.40E-270 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86566 PF00069 Pkinase 9.20E-62 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1154 K20715 - csv:101215355 1684.08