Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g1154 | ATGGAATTTGCTCCATTTTACATGGGAAATGCTTTCTCGGTTTTCAGAATTCACTTGAAAGGTTTTGAATTGTACAAAATTCCCATTTGTGGGAGCTTCTGCTTCTGCGTACTTCACCTACTTCAAAGCTGTTCTGTTCACAAACTAAAAAGAGACATTGATAATGGAGGAGAAGCGAGAAAAAGCTGGCAATCTTCTTCCAAACGGGCAATATCTACAGAAGCAAACATAGCAGAAAGGGCGGCGGAATGGGGACTGGTGGTGGAGACAAACGTGGAAGAAGGCAGTTTCAAGGCCATCGTGGGGAGAGCATCAGGTGAAGGAGGGGGCAGCAAAAGATCATCAGAGAAAATCAGTGGCACAGGAAGAACTTCAAGCTTTGGCAAGGAAACCTCTGGAGTTTTCCCAAGGGTATCACAAGAGTTGAAGGACGCTCTGGCTTCTTTAGAACAGACATTTGTAGTCTCTGATGCCACCAAACCAGACTGCCCCATCATGTATGCGAGCAGTGGCTTCTTTGGCATGACTGGTTATGCTTCAGAGGAAGTCATTGGAAGGAACTGCCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGACAAAATCCGATATGCAGTGAAAAACGGCAAAAGCTACTGCGGGAGGCTTTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAGTCACACCTATCAAGGATGACAATGGCAATACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAATACACAGAAGGCATAAATGATAAAGCATTACGACCGAATGGGTTGCCAAAGTCGTTAATCCGCTATGATGCTCGCCAGAAGGAAAAGGCAATGGATTCCATCACAGAGGTCGTTCAGACTGTGAAGAATCCTCGATCTCATAATCGAGCTATGAGTCATGACACTACCAGAAAAAAAGAAGATTTGGAAAAGTTCAATCTTGACTATGTTCTTCCAAAGTCGGTTGAAGCTGCAAATGATACACCGGGTAGACAAACTCCTCAACAGGACCTCAAAGATGATGGGTTAGGAAAGAAACCTAGGTTATCAAGTCGAGTTTCTCTAATGGGTTTCAAAGGGAAATCTCTAAGCAGTTCAAGGAAGCTTGAAGTAACAGCCTTTGAACCAGAAATTTTGATGTCCGACGAAGTAGAACGGACTGATAGTTGGGACCGTGTTGAAAGAGAAAAGGATATTCGCCAAGGAATTGATTTAGCTACCACATTGGAGAGAATTGAGAAAAATTTTGTCATTACTGATCCAAGGCTTCCTGATAATCCAATTATATTTGCATCCGACAGCTTTCTTGAATTGACGGAATATACTCGTGAGGAAATTTTGGGACGAAACTGTCGGTTTCTTCAAGGGCCTGAAACAGATCAAGAAACTGTCTCAAAGATAAGGGATGCAATTAGGGAACAAAGAGAAATAACTGTTCAGTTGATCAACTATACCAAGACTGGTAAAAAGTTCTGGAATTTATTCCACTTGCAACCAATGCGTGATGAAACGGGAGAGCTTCAATATTTTATTGGTGTACAACTAGATGGAAGTGGTCACGTGGAACCTTTGCAAAACCGCCTTTCTGAGACAGCAGAGCTGCAAAGTGCCAAGCTGGTTAAAGCCACTGCAGAGAATGTTGATGAGGCTGTTCGTGAACTTCCCGATGCCAACTTGAGACCAGAAGATTTGTGGGCACTTCATTCTCAACCAGTCTTCCCAAGGCCTCACAAGAAGCACAATTCTTCTTGGAGTGCTATACAGAAGATTATCCGACGTGGTGAAAAAATTGGACTCCAACATTTTAAGCCAATTAAACCACTGGGTTGTGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAAGCGAACTTTATGCCTTGAAAGCAATGGAGAAATCAGCACTTTTGAATCGAAACAAGGTCCACAGAGCATGCATTGAAAGGCAAATCATTGCGCTTCTGGATCATCCTTTTCTTCCAACACTATACACTTCATTTGAGACCCCTACACACGTTTGTTTGATAACAGACTTCTGCCCTGGTGGGGAGTTATTCGCATTGCTTGATAAGCAACCAATGAAAATGTTTAAAGAGGATTCTGCAAGGTTCTATGCTGCAGAGGTCGTCATTGGCTTGGAATATCTTCACTGTCTAGGAATCATTTACCGGGATTTGAAGCCTGAAAATATTCTTCTCCAGAAGGATGGGCATGTTACGCTTGCTGACTTCGATTTATCACTTGTAACATCCTGCAAACCGCAGATTGTGAAGTATCCATTGCATCATGGTAGAAGGAGATCTCGAAGTCAACCACCACCAGTATTTGTTGCAGAGCCGATCACGCAATCAAATTCTTTTGTTGGAACTGAAGAGTATATTGCTCCTGAAATTATAACAGGGGAAGGCCACAGCAGCTCTATCGATTGGTGGGCTCTTGGTATATTGTTATATGAGATGCTTTATGGTCGCACGCCTTTCAGAGGAAAGAACAGGCAGAAGACTTTTGGTAACATCTTGCACAAAGATCTCACTTTCCCAAGTAGCATTCAGGTGAGTCTTGCAGCAAGGCAGCTGATCAATGCATTGCTACAAAGAGACCCCGCCAGACGTTTAGGATCAAGTACAGGTGCAAATGAAATCAAACAGCACCCCTTTTTCCAATCAATCAACTGGCCATTGATCCGGTGTATGGTCCCGCCACCATTAGAATCACCTCTTCACCTAACTGGAAAAGATGGAACAACCAAGAACATAAACTGGGAAGATGATGGTGTGCTTAGCTCAATGGATATGGATTTCTTCTGA | 2841 | 43.15 | MEFAPFYMGNAFSVFRIHLKGFELYKIPICGSFCFCVLHLLQSCSVHKLKRDIDNGGEARKSWQSSSKRAISTEANIAERAAEWGLVVETNVEEGSFKAIVGRASGEGGGSKRSSEKISGTGRTSSFGKETSGVFPRVSQELKDALASLEQTFVVSDATKPDCPIMYASSGFFGMTGYASEEVIGRNCRFLQGPETDQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGMQVEVSKYTEGINDKALRPNGLPKSLIRYDARQKEKAMDSITEVVQTVKNPRSHNRAMSHDTTRKKEDLEKFNLDYVLPKSVEAANDTPGRQTPQQDLKDDGLGKKPRLSSRVSLMGFKGKSLSSSRKLEVTAFEPEILMSDEVERTDSWDRVEREKDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSGHVEPLQNRLSETAELQSAKLVKATAENVDEAVRELPDANLRPEDLWALHSQPVFPRPHKKHNSSWSAIQKIIRRGEKIGLQHFKPIKPLGCGDTGSVHLVELLGTSELYALKAMEKSALLNRNKVHRACIERQIIALLDHPFLPTLYTSFETPTHVCLITDFCPGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLVTSCKPQIVKYPLHHGRRRSRSQPPPVFVAEPITQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIQVSLAARQLINALLQRDPARRLGSSTGANEIKQHPFFQSINWPLIRCMVPPPLESPLHLTGKDGTTKNINWEDDGVLSSMDMDFF | 946 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 19883135 | 19897437 | - | CcPI632755_02g011540.1 | Cco02g1154 | 171911 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g1154 | 946 | MobiDBLite | consensus disorder prediction | 105 | 132 | - | - | |
Cco02g1154 | 946 | ProSiteProfiles | PAC domain profile. | 484 | 538 | IPR000700 | - | |
Cco02g1154 | 946 | PANTHER | FLIPPASE KINASE 1-RELATED | 562 | 917 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Cco02g1154 | 946 | CDD | PAS | 425 | 525 | IPR000014 | - | |
Cco02g1154 | 946 | SMART | pas_2 | 140 | 209 | IPR000014 | - | |
Cco02g1154 | 946 | SMART | pas_2 | 412 | 481 | IPR000014 | - | |
Cco02g1154 | 946 | MobiDBLite | consensus disorder prediction | 333 | 357 | - | - | |
Cco02g1154 | 946 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 732 | 744 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco02g1154 | 946 | SMART | serkin_6 | 611 | 898 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g1154 | 946 | ProSiteProfiles | PAS repeat profile. | 138 | 211 | IPR000014 | - | |
Cco02g1154 | 946 | FunFam | Putative LOV domain-containing protein | 695 | 910 | - | - | |
Cco02g1154 | 946 | ProSiteProfiles | PAS repeat profile. | 410 | 483 | IPR000014 | - | |
Cco02g1154 | 946 | FunFam | Putative LOV domain-containing protein | 152 | 308 | - | - | |
Cco02g1154 | 946 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 426 | 525 | IPR035965 | - | |
Cco02g1154 | 946 | Pfam | Protein kinase domain | 614 | 898 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g1154 | 946 | NCBIfam | PAS domain S-box protein | 165 | 255 | IPR000014 | - | |
Cco02g1154 | 946 | NCBIfam | PAS domain S-box protein | 435 | 525 | IPR000014 | - | |
Cco02g1154 | 946 | FunFam | LOV domain-containing protein | 610 | 694 | - | - | |
Cco02g1154 | 946 | Gene3D | Phosphorylase Kinase; domain 1 | 610 | 694 | - | - | |
Cco02g1154 | 946 | MobiDBLite | consensus disorder prediction | 112 | 132 | - | - | |
Cco02g1154 | 946 | Pfam | PAS domain | 433 | 525 | IPR000014 | - | |
Cco02g1154 | 946 | Pfam | PAS domain | 159 | 255 | IPR000014 | - | |
Cco02g1154 | 946 | CDD | STKc_phototropin_like | 609 | 917 | - | - | |
Cco02g1154 | 946 | ProSiteProfiles | Protein kinase domain profile. | 611 | 898 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g1154 | 946 | SUPERFAMILY | Protein kinase-like (PK-like) | 588 | 923 | IPR011009 | - | |
Cco02g1154 | 946 | ProSiteProfiles | PAC domain profile. | 212 | 266 | IPR000700 | - | |
Cco02g1154 | 946 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 159 | 251 | IPR035965 | - | |
Cco02g1154 | 946 | Gene3D | PAS domain | 399 | 563 | - | - | |
Cco02g1154 | 946 | SMART | pac_2 | 215 | 257 | IPR001610 | - | |
Cco02g1154 | 946 | SMART | pac_2 | 487 | 529 | IPR001610 | - | |
Cco02g1154 | 946 | FunFam | LOV domain-containing protein | 399 | 563 | - | - | |
Cco02g1154 | 946 | Gene3D | Transferase(Phosphotransferase) domain 1 | 695 | 914 | - | - | |
Cco02g1154 | 946 | Gene3D | PAS domain | 152 | 322 | - | - | |
Cco02g1154 | 946 | CDD | PAS | 165 | 254 | IPR000014 | - | |
Cco02g1154 | 946 | ProSitePatterns | Protein kinases ATP-binding region signature. | 617 | 640 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1154 | Cco-Chr2:19883135 | Cco10g1370 | Cco-Chr10:26715631 | 3.50E-99 | dispersed | |
Cco02g2217 | Cco-Chr2:34759185 | Cco02g1154 | Cco-Chr2:19883135 | 4.0e-311 | transposed | |
Cco05g2410 | Cco-Chr5:32603419 | Cco02g1154 | Cco-Chr2:19883135 | 4.70E-48 | transposed | |
Cco02g0328 | Cco-Chr2:2989299 | Cco02g1154 | Cco-Chr2:19883135 | 7.40E-270 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86566 | PF00069 | Pkinase | 9.20E-62 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g1154 | K20715 | - | csv:101215355 | 1684.08 |