Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1163 ATGTCTGGACGTCAACCAATTTCCATTACAACTGACCCAGATAGGCTTATACAGGTTGCCGTTGCACAGGTTCTTCCAGGTACCCGCCATCGTTTTTGCAAGTGGGCTATATTCAGAGAAACACAGGAGAAGTTGTCTCATCTTTGTCAATCTCATCCTACTTTTGAAACTGAATTTAGAAAATGTGTTAATGAGGCTGAGACAATTGAAGAATTTGAGTCTTGTTGGGAAGCCCTTCTGAATAGATATTACATTATGGACAATGACTGGCTTCAGTTAATGTATAGTGCTAGACAACAGTGGGTACCCGTCTACATGAGGGACACTTTCTTTGGAGAAATGTCAATAAATGAGAGCTATAAAAGTTTGAATTTGTTTTTTGATGGATATGTTACTGCATCCACCTCAATACAGATGTTGGTTAGACAGTATGAAAAGGCCATGGCAAGCTGGCATGAAAAAGAATTAAAAGCTGATTATGATACAATTAACTCTATGCCTGTTCTGAAGACACCATCTCCTATGGAAAAACAGGCTGCAGATTTATATTCAAGGAGGATATTCAGAAAGTTCCAGGAGGAATTGGTAGAAACGCTTGCCAATCCTGCAACCAAAATTGATGACACAGGAACCATTGCCACTTATCGAGTAGCAAAATTTGGGGAAGATCATAAAGCACATGCTGTTAGTTTTAATTCATTAGAGTTGAAAGCTAATTGCAGCTGTCAACTGTTTGAATATTCAGGAATAATTTGCAGGCATATATTAGCAGTTTTTAGGGCAAAAAATGTTCTTACACTTCCTTCCCAATATGTATTGAAACGGTGGACCAGAAATGCCAGAAATGGAGCTGTAATAGATGACCATAATTCTGAATTATCAAATGAAGCTGGAGATTCTTCGACTGTTAGATACAACAATCTTCGTCAACAGGCAATTAAGTTTGTTGAGGAAGGAGCAAAGTCAATTCATATTTATAACGTGGCTATGGATGCCCTAAAAGAGGCCTCTAGAAAGGTTGCTGCTGTGAAGAATCAGGGCCCTGGAGCGACTAACGGTGATATTATAGCCAATGGAGTTGGGGCATTGGTTGCAACAGAAGAGGATCAGACAACAACCTATCAATCGGTGGAACAAAAGGAGAAGAAAATTCGCGAGCTTTCTGCAGAGTTGGAAAAAACAAATCAACGCTGCGAAGTGTATAGAGCAAATCTCCTAGCTGTTTTAAGGGACATGGAAGAGCAGAAGTTGAAGTTATCTGTGAAGGTCCAAAATGCAAGGCTTAGTTTGAAAGAGTGA 1299 39.57 MSGRQPISITTDPDRLIQVAVAQVLPGTRHRFCKWAIFRETQEKLSHLCQSHPTFETEFRKCVNEAETIEEFESCWEALLNRYYIMDNDWLQLMYSARQQWVPVYMRDTFFGEMSINESYKSLNLFFDGYVTASTSIQMLVRQYEKAMASWHEKELKADYDTINSMPVLKTPSPMEKQAADLYSRRIFRKFQEELVETLANPATKIDDTGTIATYRVAKFGEDHKAHAVSFNSLELKANCSCQLFEYSGIICRHILAVFRAKNVLTLPSQYVLKRWTRNARNGAVIDDHNSELSNEAGDSSTVRYNNLRQQAIKFVEEGAKSIHIYNVAMDALKEASRKVAAVKNQGPGATNGDIIANGVGALVATEEDQTTTYQSVEQKEKKIRELSAELEKTNQRCEVYRANLLAVLRDMEEQKLKLSVKVQNARLSLKE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20296741 20300132 + CcPI632755_02g011630.1 Cco02g1163 171920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1163 432 ProSiteProfiles Zinc finger SWIM-type profile. 225 263 IPR007527 GO:0008270(InterPro)
Cco02g1163 432 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 344 IPR031052 GO:0006355(InterPro)
Cco02g1163 432 Coils Coil 374 404 - -
Cco02g1163 432 Coils Coil 326 346 - -
Cco02g1163 432 Pfam SWIM zinc finger 235 263 IPR007527 GO:0008270(InterPro)
Cco02g1163 432 Coils Coil 409 429 - -
Cco02g1163 432 SMART 26again6 238 265 IPR006564 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1163 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1163 Cco-Chr2:20296741 Cco05g0653 Cco-Chr5:5321952 2.40E-47 dispersed
Cco03g1467 Cco-Chr3:29272922 Cco02g1163 Cco-Chr2:20296741 9.40E-111 transposed
Cco02g0335 Cco-Chr2:3042596 Cco02g1163 Cco-Chr2:20296741 3.00E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g320 . . . . . . . . . . . Cma20g00708 . Car20g00607 . . . . . . . . . . Cla02g00322 Cam02g0331 Cec02g0331 Cco02g0335 Clacu02g0321 Cmu02g0320 Cre02g0653 . . Cone3ag1258 . . . . . . . . . . . . . . . Cmo20g00702 . . Car11g01433 . Cpe16g00358 . . . . . . . . Cla02g01052 Cam02g1123 Cec02g1127 Cco02g1163 Clacu02g1110 Cmu02g1074 Cre02g1378 Lsi11g01315 . . Cme11g01021
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365