Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1169 ATGAATTTCAAATCTCTCCATTTTCTCCTTTCCATTATAACCTTTTTCTTGTTTCTCTCAATTTCTACTTCTGACGAAGACCCATCTTCTTCCTCTGCAATAATATCAAGGTTCCAACAATACCTTCAGATTAATACCGTCCAACCCAGCCCCAAATACTATGAAGCTGCTGATTTCATCATTTCTCAGGCCAAATCTCTCTCCCTTGAATCTAGGACAATTGAATTCGTCGCGGGCAAGCCTCTGGTTCTCCTCAAATGGCCTGGTTCCAACCCTGATCTCCCCTCGATCCTCCTTAATTCGCATACCGATGTTGTTCCAGCTGAGCATCACAAATGGACGCACCCTCCTCTTGGAGCTCATATCGATTCCCATGGCAATATCTATGCCAGAGGGTCTCAGGATATGAAGTGCGTTGGGATGCAGTACCTTGAGGCTATTCGGCGTTTGAAGGAATCTGGGTTTGAGCCTCTGCGCTCTGTTTACCTATCTTTTGTTCCGGATGAAGAAATTGGTGGCCATGGTGGTGCTGAGAAATTTGCTGAATCTGATGAGTTCGAGAAATTGAATGTCGCCATTGTGCTGGATGAAGGGTTGCCTTCTCCGGGTGAGAATTATAGGGTGTTTTATGGGGAGAAGAGCCCCTGGTGGTTAGTGATTAAGGCAGTTGGAGCGCCAGGTCATGGAGCTAAGCTTTATGATAACACTGCCTTGGAGAATCTTTTCAAAAGCATTGAGACTGTCAGAAGGTTTAGAGCTTCACAGTTTGATTTGATCAAGTCTGGTTTGAAGACTGAAGGAGATGTTATCTCTGTCAACATGGTCTTCTTAAAATCTGGCACTCCATCTCCTACTGGCTTTGTCATGAATCTGCAGCCATCTGAAGCTGAGGCTGGTTTTGATGTTCGCCTCCCACCGACTGCAAATCCGGAGTCTCTTGAGAGACGAATTGCAGAGGAATGGGCACCAGCTTCTCGTAATATGACGTTTGAGTTTAAGCAGAAGGAATCTATTTACAACAAGTTTGGGAAACCAGCTCTTACTGCTATTGACAAATCTAACCCATGGTGGAATCTTCTTGAAGAAGCTGTAAGAAATGCCAATGGAAAACTTGCAAACCCAGAAATCTTTCCTGCTTCAACGGATGCCCGATACTTTCGAAATCTTGGCCTTCCTGCAATTGGCTTCTCTCCAGTGGCCAACACTCCTATTCTTCTTCATGACCATAATGAGTTTCTGAACCAAGCTGAGTTTTTGAAAGGCATTGAGGTGTACGAGTCAATAATCAAGGCTTATGCTTCTTATGACGATGACAAATCGACCAAGAGCTTCACAGATGAGGGGGAGCCCTCTGACAATGGAAAGATCTCCGTGCGTGGCGTGATAAGGAATCCTAGAAAAGATCGATTGAGACTCCCTCCCCGGTCCCACGAAGATCTCTACGTACTTGTCCAGTCCAGGACAACAGAGATCTTCCGGTCTGCGTGCGTGGGAGCAGCTCAAACAAAGAAGAGTCTGGTCTGA 1524 45.6 MNFKSLHFLLSIITFFLFLSISTSDEDPSSSSAIISRFQQYLQINTVQPSPKYYEAADFIISQAKSLSLESRTIEFVAGKPLVLLKWPGSNPDLPSILLNSHTDVVPAEHHKWTHPPLGAHIDSHGNIYARGSQDMKCVGMQYLEAIRRLKESGFEPLRSVYLSFVPDEEIGGHGGAEKFAESDEFEKLNVAIVLDEGLPSPGENYRVFYGEKSPWWLVIKAVGAPGHGAKLYDNTALENLFKSIETVRRFRASQFDLIKSGLKTEGDVISVNMVFLKSGTPSPTGFVMNLQPSEAEAGFDVRLPPTANPESLERRIAEEWAPASRNMTFEFKQKESIYNKFGKPALTAIDKSNPWWNLLEEAVRNANGKLANPEIFPASTDARYFRNLGLPAIGFSPVANTPILLHDHNEFLNQAEFLKGIEVYESIIKAYASYDDDKSTKSFTDEGEPSDNGKISVRGVIRNPRKDRLRLPPRSHEDLYVLVQSRTTEIFRSACVGAAQTKKSLV 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20429898 20433672 + CcPI632755_02g011690.1 Cco02g1169 171926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1169 507 PIRSF ACY-1 24 437 - -
Cco02g1169 507 FunFam Aminoacylase-1, putative 354 435 - -
Cco02g1169 507 CDD M20_AcylaseI_like 26 433 - -
Cco02g1169 507 MobiDBLite consensus disorder prediction 438 453 - -
Cco02g1169 507 Gene3D - 354 434 - -
Cco02g1169 507 Gene3D Zn peptidases 26 216 - -
Cco02g1169 507 Gene3D - 217 327 - -
Cco02g1169 507 NCBIfam N-acyl-aliphatic-L-amino acid amidohydrolase 29 434 IPR010159 GO:0004046(InterPro)|GO:0005737(InterPro)|GO:0006520(InterPro)
Cco02g1169 507 FunFam aminoacylase-1 isoform X1 217 328 - -
Cco02g1169 507 FunFam Aminoacylase 1 26 217 - -
Cco02g1169 507 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 97 106 IPR001261 -
Cco02g1169 507 PANTHER AMINOACYLASE-1 9 437 IPR052083 GO:0004046(PANTHER)
Cco02g1169 507 SUPERFAMILY Zn-dependent exopeptidases 32 433 - -
Cco02g1169 507 MobiDBLite consensus disorder prediction 438 457 - -
Cco02g1169 507 Pfam Peptidase family M20/M25/M40 98 430 IPR002933 GO:0016787(InterPro)
Cco02g1169 507 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 133 172 IPR001261 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1169 K14677 - - csv:101213747 812.757
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1169 Cco-Chr2:20429898 Cco06g1887 Cco-Chr6:29070168 6.50E-145 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g310 . . . . . . . . . . Cma02g00306 . Car02g00185 . . . . . . . . . . . . . . . . . . . . Cone17ag1276 . . . . . . . . . . . . . . Cmo02g00300 . . . . . . Cpe05g01333 . . . . . . . Cla02g01055 Cam02g1127 Cec02g1131 Cco02g1169 Clacu02g1115 Cmu02g1078 Cre02g1382 . . . Cme11g01027
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011281 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 31