Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1178 TTTTTGGGTTTGTCGCTGGATTTTCTTTCTAAATCTGCAAAGATGGAGTTCTGGGGTCCTTTGGAATTCTTTTACGTGGTTTTGAATTTGATCCGAGAAGGGGAGGGGGGGGGGGGGGGTGTCGAACTGGATTGTGGATTGATTTCCCTTTGTATCATTCGTGTTCTTGTTCTGTGGTATTTTGATCAATCTCTCAAACTTTCTGGATTGTTTCTGGGTAAATTTATTGTTCCTGATCTTGATGTTCAACAATGGAAACTCTTGTTCTTCATATTTCCAAAGACTTGTTTTGTACCTGAAATTTTGATCAGAATGGGTCTCTCCAGCCTTCCTGCCCCTTCCGAAGGAGTACTGGGTGTCATCCTTGTAAATACAGCCTTATCAATTTCTATCTTCAAAGGGATAGTTCGGTCAATTCTCCACGTTGTTGGCATCCATCTCTTGTCGTCGCCTACATTACCATCTTCACCAGATTCCATGGAGAATGCTCCTGAATCCATAGAATTCCATCTTAACCCAAATGGAAGTTACATTGAAGAGTTCCACAGCCGAATTCCAGCAATTCTGTTCGACAAAGTTCATAGCTGCAAATGGCTCGAACACGACTGCTCGGTCTGCCTAACCCAGTTTGAACCTGAATCAGAGATAAACCATTTATCTTGTGGCCATCTCTTCCACAGAGTGTGCTTGGAGAAGTGGTTGGACTACTGGAACCTTACATGTCCACTTTGTCGAACTCCACTAGTGCCCGAAGAAGACACAGCTTCCTGCTTTTGTCTTGAGACTGGCTTTTACATTTCGAGTTAA 807 43.12 FLGLSLDFLSKSAKMEFWGPLEFFYVVLNLIREGEGGGGGVELDCGLISLCIIRVLVLWYFDQSLKLSGLFLGKFIVPDLDVQQWKLLFFIFPKTCFVPEILIRMGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLLSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFHSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLVPEEDTASCFCLETGFYISS 268
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 21021174 21022783 - CcPI632755_02g011780.1 Cco02g1178 171935
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1178 268 Pfam Ring finger domain 202 245 IPR001841 -
Cco02g1178 268 PANTHER - 105 255 IPR044249 -
Cco02g1178 268 ProSiteProfiles Zinc finger RING-type profile. 203 245 IPR001841 -
Cco02g1178 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 250 IPR013083 -
Cco02g1178 268 SMART ring_2 203 244 IPR001841 -
Cco02g1178 268 SUPERFAMILY RING/U-box 192 251 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0317 Cco-Chr2:2878987 Cco02g1178 Cco-Chr2:21021174 1.00E-52 dispersed
Cco02g1178 Cco-Chr2:21021174 Cco08g0304 Cco-Chr8:5538150 1.20E-07 dispersed
Cco02g1178 Cco-Chr2:21021174 Cco06g0353 Cco-Chr6:3978058 3.50E-12 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1178 K16285 - csv:101216645 315.464