Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco02g1178 | TTTTTGGGTTTGTCGCTGGATTTTCTTTCTAAATCTGCAAAGATGGAGTTCTGGGGTCCTTTGGAATTCTTTTACGTGGTTTTGAATTTGATCCGAGAAGGGGAGGGGGGGGGGGGGGGTGTCGAACTGGATTGTGGATTGATTTCCCTTTGTATCATTCGTGTTCTTGTTCTGTGGTATTTTGATCAATCTCTCAAACTTTCTGGATTGTTTCTGGGTAAATTTATTGTTCCTGATCTTGATGTTCAACAATGGAAACTCTTGTTCTTCATATTTCCAAAGACTTGTTTTGTACCTGAAATTTTGATCAGAATGGGTCTCTCCAGCCTTCCTGCCCCTTCCGAAGGAGTACTGGGTGTCATCCTTGTAAATACAGCCTTATCAATTTCTATCTTCAAAGGGATAGTTCGGTCAATTCTCCACGTTGTTGGCATCCATCTCTTGTCGTCGCCTACATTACCATCTTCACCAGATTCCATGGAGAATGCTCCTGAATCCATAGAATTCCATCTTAACCCAAATGGAAGTTACATTGAAGAGTTCCACAGCCGAATTCCAGCAATTCTGTTCGACAAAGTTCATAGCTGCAAATGGCTCGAACACGACTGCTCGGTCTGCCTAACCCAGTTTGAACCTGAATCAGAGATAAACCATTTATCTTGTGGCCATCTCTTCCACAGAGTGTGCTTGGAGAAGTGGTTGGACTACTGGAACCTTACATGTCCACTTTGTCGAACTCCACTAGTGCCCGAAGAAGACACAGCTTCCTGCTTTTGTCTTGAGACTGGCTTTTACATTTCGAGTTAA | 807 | 43.12 | FLGLSLDFLSKSAKMEFWGPLEFFYVVLNLIREGEGGGGGVELDCGLISLCIIRVLVLWYFDQSLKLSGLFLGKFIVPDLDVQQWKLLFFIFPKTCFVPEILIRMGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLLSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFHSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLVPEEDTASCFCLETGFYISS | 268 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 21021174 | 21022783 | - | CcPI632755_02g011780.1 | Cco02g1178 | 171935 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco02g1178 | 268 | Pfam | Ring finger domain | 202 | 245 | IPR001841 | - | |
| Cco02g1178 | 268 | PANTHER | - | 105 | 255 | IPR044249 | - | |
| Cco02g1178 | 268 | ProSiteProfiles | Zinc finger RING-type profile. | 203 | 245 | IPR001841 | - | |
| Cco02g1178 | 268 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 170 | 250 | IPR013083 | - | |
| Cco02g1178 | 268 | SMART | ring_2 | 203 | 244 | IPR001841 | - | |
| Cco02g1178 | 268 | SUPERFAMILY | RING/U-box | 192 | 251 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g0317 | Cco-Chr2:2878987 | Cco02g1178 | Cco-Chr2:21021174 | 1.00E-52 | dispersed | |
| Cco02g1178 | Cco-Chr2:21021174 | Cco08g0304 | Cco-Chr8:5538150 | 1.20E-07 | dispersed | |
| Cco02g1178 | Cco-Chr2:21021174 | Cco06g0353 | Cco-Chr6:3978058 | 3.50E-12 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco02g1178 | K16285 | - | csv:101216645 | 315.464 |