Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1179 ATGGGTTTCATGTGTGATTTTTGTGGGGATCAAAGGTCAATGGTGTACTGCCAATCTGATGCTGCTTGTTTGTGCTTATCGTGTGATCGTAATGTCCATTCAGCTAACGCCTTGTCGAGGCGTCATACACGAACGCTGCTGTGTGAAAGATGCCATTCACAACCCTCCACGGTAAGGTGTATTGATGAGAGGCTTTCTCTCTGTCAAAATTGTGACTGGACAGGTCATGGCACATCTACCCTTGCTTCCTCATCACACAAGAGGCAAACCATCAATTGTTACTCTGGTTGTCCTTCCGCTGCAGAACTTTCTTCCATATGGTCCTTTGTTTTGGATGTTCCCTCTGTAAATGATGCTTGTGAGAAAGAGTTGGGATTGATGAGCATTGCTGAGACTGATTTGATGGGCACCTGGAGCCTTTCAGAGAACAACGCCGGTCAAAGAATGCCTGGGTCAACTGAAGCCAGTGATGTTTGCAGCAGGGAAAAGTCAAATGCTTTGGTTGGATCATCTTCACTCATTGATTTTGGCTTTAGGCCTCACACTTCAGATCAGCCAGTTGAATTGGCTAATGTGGCTTTACCTAAGTTTTGCTGTCCTGGAACAAAAGTTGCTGAATTCTGTGGTGAGGACGATGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGAGCTATTTAGTATGAGCCTTAATCATTCTGAAGAATTTTTCGAGAATGGTGGAACTGATAGCTTTTTTGAGGCAGAAGGCCTGTCTTTTGAAGATTCAGTTTGCCACAGTGCTGTTGCTGCAGAGGGTTCTTCCATCGGAGTGGTCAAACGAATGCAGCCAGCCTGCAGCAACGGAGCCTCTGCTGACTCAGTGATGAGTGCTAAAACCGAACCGGTTCTCTGTTTTAATTCAAGGCAAGCCCAATCGGGTGTGTCATTTTCTGGCCTTACTGGTGAGAGTAGTGCTGGTGATCATCAAGACTGTGGAGCCTCTTCGATGCTCCTAATGGGTGAGCCTCCATGGTGTGCCCCTGGCGCTGAAAGTTCCTTCCCATCTTCTGATCGTAATAGCGCTGTTCTGCGTTATAAGGAGAAAAAGAAGACGCGCAAGTTTGAGAAAACAGTGAGATACGCGACTCGCAAAGCGAGAGCTGATGTCAGAAGGCGTGTGAAGGGACGGTTTGTGAAGGCTGGAGAGGCCTATGATTACGACCCACTGAACCAGGCTAGAAGCTGCTGA 1254 46.65 MGFMCDFCGDQRSMVYCQSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHSQPSTVRCIDERLSLCQNCDWTGHGTSTLASSSHKRQTINCYSGCPSAAELSSIWSFVLDVPSVNDACEKELGLMSIAETDLMGTWSLSENNAGQRMPGSTEASDVCSREKSNALVGSSSLIDFGFRPHTSDQPVELANVALPKFCCPGTKVAEFCGEDDDLYKEFDMDEMDLNLENYEELFSMSLNHSEEFFENGGTDSFFEAEGLSFEDSVCHSAVAAEGSSIGVVKRMQPACSNGASADSVMSAKTEPVLCFNSRQAQSGVSFSGLTGESSAGDHQDCGASSMLLMGEPPWCAPGAESSFPSSDRNSAVLRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQARSC 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21088097 21091194 - CcPI632755_02g011790.1 Cco02g1179 171936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1179 417 Pfam CCT motif 360 402 IPR010402 GO:0005515(InterPro)
Cco02g1179 417 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cco02g1179 417 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cco02g1179 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 407 - -
Cco02g1179 417 ProSiteProfiles CCT domain profile. 360 402 IPR010402 GO:0005515(InterPro)
Cco02g1179 417 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cco02g1179 417 CDD Bbox1_BBX-like 47 91 IPR049808 -
Cco02g1179 417 ProSiteProfiles Zinc finger B-box type profile. 43 91 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1179 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0319 Cco-Chr2:2903135 Cco02g1179 Cco-Chr2:21088097 1.20E-120 dispersed
Cco02g0903 Cco-Chr2:10896773 Cco02g1179 Cco-Chr2:21088097 4.50E-32 dispersed
Cco02g1179 Cco-Chr2:21088097 Cco05g2500 Cco-Chr5:33392992 3.40E-14 dispersed
Cco02g1179 Cco-Chr2:21088097 Cco11g1273 Cco-Chr11:25229191 1.20E-11 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1564 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.4 1.8e-83 306.6
Cco06g1497 . 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 51.4 8.8e-59 224.6
Cco06g1497 . 1 375 C2C2-CO-like Transcription Factor Family AT5G57660 50.5 1.7e-67 253.4
Cco08g1564 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 8.3e-54 208.0
Cco02g1179 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 5.8e-90 328.2
Cco02g0319 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 2.9e-89 325.9
Cco02g1179 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 2.1e-87 319.7
Cco02g0319 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 3.9e-86 315.5
Cco02g1179 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 2.1e-87 319.7
Cco02g0319 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 3.9e-86 315.5
Cco02g0508 . 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 55.2 3.6e-51 199.1
Cco11g0413 . 1 184 C2C2-CO-like Transcription Factor Family AT1G75540 53.2 1.4e-42 170.6
Cco07g1085 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.3 4.1e-76 282.0
Cco07g0890 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 9.6e-56 213.4
Cco04g1775 . 1 107 C2C2-CO-like Transcription Factor Family AT2G21320 81.3 5.7e-48 187.6
Cco07g0890 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 6.4e-58 220.7
Cco04g1775 . 1 107 C2C2-CO-like Transcription Factor Family AT4G38960 82.2 1.2e-48 189.9
Cco02g0508 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 3.0e-55 212.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58762 PF06203 CCT 6.50E-16 CL0281 Cco TF