Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1208 ATGGATTTCTCTCTCAAGTCTTTCAAATCTCATGCCTCTTACAAGTATGTGAGGAAGCTTTCTGGGGCAGATGCTACTCAAGATCAAGAGCAACTTCCCATTCTTTCAGATCAGCACCACTCCACTATGGCGGTCTCCGATGCATCTGATCGGAAAGAGTTTATCGTCAAGGTCGACCAGGCCGATGCTTCGAGTAATGCTTCTTTCAGAGCTATGGAGCCGGTGAACACCAGTGGGAGGATTTGGCGGGAGTCCAGCTATGATTTCTGGAATGATAGTGATAATAGACGGAATAATGGTGAAGTTATAAGTGGAGATGGTGGTGGTAGGAGTGAGGATTTTGAGTTTAGGCAAGACAGGAAGGGTGTGGAAGATCCGCCGTCGAAGCTTATTGGACAGTTTCTTCATAAGCAGAAGGCGTCGGGAGAGATGTCTTTAGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTTTGCTTCCTGCGGTGGCGGAATCTCCGATGCGACGGAGCTCGAGAGAGTTGAAGGTCGCGTTCGAGTCTATTTCAGAAATTTCTGAAAACGATTCGATGCGAAGACGGCACAGAGACTCTCTGCCTGTTGATGAAGAACATAGAGTACAGCAACCGCAGCAGCGTGATCGTCGAGCGTATGGCAGCAATGGTGAAGATGATAGTGCTGCTGAGGTCTTGAGATGCACATCTAATTCGTCCTTCGATAGAGATATACCGTTCCAGAGGAAATCTAGCTTGCTTAGGGCTAAAACTAAGTCTAGATTGCTGGATCCACCTGAACACCAAGACCGGAGGTCAGGGCGTGTACCAAAATCAGGGCAAGTTCGCTCTGGTTTATTGTCAAAAACCTTAGATGAGGAAGACGATGATCCATTCTTGGAAGAAGATCTTCCTGATGAGTATAAGAAAGCTAATCTCGGTGTTCTGACTCTGTTACAGTGGGCGAGTTTGATTTTGATAATCGCAGCATTGATTTGCACTTTGACAATTCGTTACTGGAGGAGAAAGAAACTATGGAAGCTTGAACTATGGAAATGGGAGGTTATGATTCTTGTTCTGATATGTGGAAGGCTGGTTTCTGGTTGGGGGATTAGGATAATCGTCTTCTTCATTGAAAGGAACTTTCTACTGCGTAAGAGGGTTCTATACTTTGTTTACGGAGTCAGAAAGGCCGTCCAGAATTGTCTTTGGTTGGGTCTAGTTTTAATTGCTTGGAACTTCCTGTTTGATGAAAAAGTTCAAAGAGAAGTAAAAAGCAATGTCCTAGAGTACGTGACCAAAGTATTGGTATGTCTTCTTATAAGCACTTTGGTTTGGCTTGTAAAAACGCTGATGGTGAAGGTTTTGGCCTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAAGATGCATTGTTTAACCAATATGTAATTGAGACACTGTCAGGGCCTCCATTGATAGAGATTCAGAAGAACGAGGAAGAAGAAGAGAGACTGGCAGAAGAGGTTACAAAGTTACAGAACGCAGGGGCTACCATCCCTCCTGATTTAAGGGCAACTGCCTTTTCAACAACTCAAAAGGGTGTGAGGGTGATAGGGAGTGGAAGGTTGCAGAAAAGTCCTCGTGGAAGAAGTGACAAGCTATCTAGGACACTGTCTAAAGAGGGTGATGAGGGTATAACAATTGATCACTTGCATAAGCTTAATCCTAAGAATGTGTCTGCTTGGAACATGAAGAGGTTGATGAACATCGTTAGACATGGGGCCCTTTCAACTTTGGATGAACAGATAAAAGATTCAACTCATGAGGACGAATCGACAACACAGATCAAGAGTGAATATGAGGCGAAAGTTGCTGCTAAGAAGATTTTTCTGAACGTGGCTAGGCATGGTTCTAAATATATCTACCTAGAGGACTTGATGCGTTTCATGGAAAAAGATGAGGCTTCAAAAACCATGGGTCTCTTTGAAGGAGCATGTGAGAGTAGGAAAATAAGCAAATCGTCATTAAAAAATTGGGTGGTCAATGCCTTTAGAGAACGGAGGGCCCTAGCTTTGACATTAAACGATACCAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCTGTCATTATTCTGGTTATTTGGCTATTGATTCTGGGTATAGCCACTAGCAAGTTTCTCCTATTCGTGACCTCTCAACTTGTCCTTGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTCGAATCAATCATCTTCCTATTTGTCATGCATCCATTTGATGTCGGAGACCGATGCGAAATTGATGGTGTGCAGATGATTGTAGAAGAAATGAACATTTTGACGACCAGTTTTCTAAGATATGACAACCAGAAGATCATATTTCCGAACAGTGTTCTCGCGACGAAGGCTATCCACAACTTCTATCGTAGTCCTGACATGGGAGATGCTGTGGAATTCTGTCTTCACATATGTACTCCGCCTGAGAAAATTGCTATTATGAGACAAAGAATAATAAGTTTCATCGAGAGCAAGAAAGAGCATTGGTGTCCTGCTCCATTGATTGTCCTCAAGGATGTAGAAGAGTTGAATAGAATGAGAATAGCAATATGGCTTACTCATAGAATGAACCATCAAGACATGGGGGAGAGGTGGACAAGGAGGGCTCTTTTGGTCGAAGAACTTGTTAAAATTTTCCAAGAGCTTGATCTGCAATACCGTCTCCTACCGCTTGATATCAATGTTCGCTCCTTGCCTCCAGTGAACTCTACTAGTCTTCCTTCAAGATAA 2793 42.93 MDFSLKSFKSHASYKYVRKLSGADATQDQEQLPILSDQHHSTMAVSDASDRKEFIVKVDQADASSNASFRAMEPVNTSGRIWRESSYDFWNDSDNRRNNGEVISGDGGGRSEDFEFRQDRKGVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKTLLPAVAESPMRRSSRELKVAFESISEISENDSMRRRHRDSLPVDEEHRVQQPQQRDRRAYGSNGEDDSAAEVLRCTSNSSFDRDIPFQRKSSLLRAKTKSRLLDPPEHQDRRSGRVPKSGQVRSGLLSKTLDEEDDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALICTLTIRYWRRKKLWKLELWKWEVMILVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDEKVQREVKSNVLEYVTKVLVCLLISTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVTKLQNAGATIPPDLRATAFSTTQKGVRVIGSGRLQKSPRGRSDKLSRTLSKEGDEGITIDHLHKLNPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSTHEDESTTQIKSEYEAKVAAKKIFLNVARHGSKYIYLEDLMRFMEKDEASKTMGLFEGACESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFESIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTSFLRYDNQKIIFPNSVLATKAIHNFYRSPDMGDAVEFCLHICTPPEKIAIMRQRIISFIESKKEHWCPAPLIVLKDVEELNRMRIAIWLTHRMNHQDMGERWTRRALLVEELVKIFQELDLQYRLLPLDINVRSLPPVNSTSLPSR 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22474843 22478734 + CcPI632755_02g012080.1 Cco02g1208 171965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1208 930 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 35 929 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Cco02g1208 930 Gene3D - 760 809 IPR023408 -
Cco02g1208 930 Coils Coil 490 513 - -
Cco02g1208 930 MobiDBLite consensus disorder prediction 258 282 - -
Cco02g1208 930 SUPERFAMILY Sm-like ribonucleoproteins 750 809 IPR010920 -
Cco02g1208 930 MobiDBLite consensus disorder prediction 108 126 - -
Cco02g1208 930 MobiDBLite consensus disorder prediction 541 556 - -
Cco02g1208 930 MobiDBLite consensus disorder prediction 189 229 - -
Cco02g1208 930 FunFam Predicted mechanosensitive ion channel 760 809 - -
Cco02g1208 930 Pfam Mechanosensitive ion channel, beta-domain 749 809 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g1208 930 PIRSF Memb_At2g17000 37 930 IPR016688 -
Cco02g1208 930 MobiDBLite consensus disorder prediction 537 556 - -
Cco02g1208 930 MobiDBLite consensus disorder prediction 189 224 - -
Cco02g1208 930 MobiDBLite consensus disorder prediction 260 277 - -
Cco02g1208 930 MobiDBLite consensus disorder prediction 95 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0422 Cco-Chr2:3805530 Cco02g1208 Cco-Chr2:22474843 0.00E+00 dispersed
Cco02g1208 Cco-Chr2:22474843 Cco03g1576 Cco-Chr3:30399368 4.00E-148 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1208 K22048 - csv:101210264 1583.93