Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g1215 | AATCGGAATGTCCGTCCTTTGTTCGACGTCGCAAACTTAGGAACTTCTTCATTGCACAAAAAGGAGTCCAATCTAAACAATTCTTGGATGCCTAAATTAGAAAAGTTACAAACTAGACGGCCTGGTTCTTTATCTGTGGCCGAGACTCTTGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTAATGATGAGGCAAAACTTGCTCGAAGAGTTCCAGCCAAGGGATCTAAGAAAGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATATGCGATGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGGAAGTGGGTTGCAGAAATTCGGGCACCGAATAGAGGAAGTCGGCTCTGGTTAGGTACATTTCCAACTGCCATTGACGCCGCACTTGCTTATGATGAAGCTGCAAGGGCCATGTACGGCACTTTAGCTCGCCTGAATTTTCCCAATATCTCAATTCCAACCTTGCTAAAAGAAAAGGAATCACCAACTAAGGATTCTCCTGAAATCAAGAGGTCTTCAATCTCCTTTCTAGGGTCAACTTCACTGAGTCTGAGTTCCGAATCCACAATAACATCAGATCACTCAGAGGATTGTGCAGTTGAAGATGTCTAG | 624 | 43.91 | NRNVRPLFDVANLGTSSLHKKESNLNNSWMPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNDEAKLARRVPAKGSKKGCMKGKGGPENMRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPTAIDAALAYDEAARAMYGTLARLNFPNISIPTLLKEKESPTKDSPEIKRSSISFLGSTSLSLSSESTITSDHSEDCAVEDV | 207 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 22625311 | 22627377 | + | CcPI632755_02g012150.1 | Cco02g1215 | 171972 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g1215 | 207 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 35 | 187 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Cco02g1215 | 207 | SUPERFAMILY | DNA-binding domain | 95 | 152 | IPR016177 | GO:0003677(InterPro) | |
Cco02g1215 | 207 | SMART | rav1_2 | 95 | 158 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1215 | 207 | Gene3D | AP2/ERF domain | 95 | 153 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1215 | 207 | MobiDBLite | consensus disorder prediction | 186 | 207 | - | - | |
Cco02g1215 | 207 | PRINTS | Ethylene responsive element binding protein signature | 96 | 107 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1215 | 207 | PRINTS | Ethylene responsive element binding protein signature | 118 | 134 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1215 | 207 | Pfam | AP2 domain | 95 | 144 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1215 | 207 | CDD | AP2 | 94 | 153 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1215 | 207 | FunFam | Ethylene-responsive transcription factor 2 | 94 | 153 | - | - | |
Cco02g1215 | 207 | ProSiteProfiles | AP2/ERF domain profile. | 95 | 152 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1215 | Cco-Chr2:22625311 | Cco11g0613 | Cco-Chr11:6571005 | 8.00E-49 | dispersed | |
Cco02g1215 | Cco-Chr2:22625311 | Cco04g0852 | Cco-Chr4:24101945 | 6.80E-40 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58764 | PF00847 | AP2 | 5.90E-14 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g1215 | - | - | - | 0.0 |