Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1215 AATCGGAATGTCCGTCCTTTGTTCGACGTCGCAAACTTAGGAACTTCTTCATTGCACAAAAAGGAGTCCAATCTAAACAATTCTTGGATGCCTAAATTAGAAAAGTTACAAACTAGACGGCCTGGTTCTTTATCTGTGGCCGAGACTCTTGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTAATGATGAGGCAAAACTTGCTCGAAGAGTTCCAGCCAAGGGATCTAAGAAAGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATATGCGATGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGGAAGTGGGTTGCAGAAATTCGGGCACCGAATAGAGGAAGTCGGCTCTGGTTAGGTACATTTCCAACTGCCATTGACGCCGCACTTGCTTATGATGAAGCTGCAAGGGCCATGTACGGCACTTTAGCTCGCCTGAATTTTCCCAATATCTCAATTCCAACCTTGCTAAAAGAAAAGGAATCACCAACTAAGGATTCTCCTGAAATCAAGAGGTCTTCAATCTCCTTTCTAGGGTCAACTTCACTGAGTCTGAGTTCCGAATCCACAATAACATCAGATCACTCAGAGGATTGTGCAGTTGAAGATGTCTAG 624 43.91 NRNVRPLFDVANLGTSSLHKKESNLNNSWMPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNDEAKLARRVPAKGSKKGCMKGKGGPENMRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPTAIDAALAYDEAARAMYGTLARLNFPNISIPTLLKEKESPTKDSPEIKRSSISFLGSTSLSLSSESTITSDHSEDCAVEDV 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22625311 22627377 + CcPI632755_02g012150.1 Cco02g1215 171972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1215 207 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 35 187 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cco02g1215 207 SUPERFAMILY DNA-binding domain 95 152 IPR016177 GO:0003677(InterPro)
Cco02g1215 207 SMART rav1_2 95 158 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1215 207 Gene3D AP2/ERF domain 95 153 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1215 207 MobiDBLite consensus disorder prediction 186 207 - -
Cco02g1215 207 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1215 207 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1215 207 Pfam AP2 domain 95 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1215 207 CDD AP2 94 153 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1215 207 FunFam Ethylene-responsive transcription factor 2 94 153 - -
Cco02g1215 207 ProSiteProfiles AP2/ERF domain profile. 95 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1215 Cco-Chr2:22625311 Cco11g0613 Cco-Chr11:6571005 8.00E-49 dispersed
Cco02g1215 Cco-Chr2:22625311 Cco04g0852 Cco-Chr4:24101945 6.80E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58764 PF00847 AP2 5.90E-14 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1215 - - - 0.0