Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1231 ATGGTGTTGTCTCTGATGGAAAACAAGAAGATGAAGATTAATCTATTTATCTCTAGTTTATGCTTGTCTTTTTTGCTTTTAATATGGTCCGCTAGAGGAAATCTCATCAATTCATTAAGTGACAGTAATGGAGATTCTATTGTTTCGGATGAAGGAAGAGGGAATCTCATCAATTCATTAAGCGACAGTCATGGAGATTCTATTGTTTCGGATGAAGGAAGGTTCAAACTTGGTTTTTTCAGTCCTCATGGAAGCTCAGACTCTAGAAGATATGTCGGAATATGGTACCACGACACAAAACCGGAGGTGGTTGTATGGGTTGCCAATAGGAACCAACCACTATACAACAACAATGGATCTTTCGCTATCAAAAATGGCAAACTCATGGTATTGGCATCAAACGGCACTGATTTATGGTCCACCAAGCTCCAATTCCCTTCTGATAACATGACAATGGAGCTGATGGCTTCTGGGAATTTAGTCATCAAGCAATCAGGTGTCAAAGGTATCATTATGTGGCAAAGCTTCCACAATCCAACCGACACATTTCTTCCAGGAATGAACATAGTTGATGACTGGAAACTGACTTCTTGGAAAGCTTCAGATGACCCATCGTCTGGGAATTTCAAGTTTCTCAAAGATACAGGAGGTCGCTACATCATTGAGAGACTAAGTGCTCAGTATTGGGTTAGCAAGGAATTCTGGCAAAATTACTCAACTGACACTAATGGAAAGATTGATGAAGTTATAGACTTATTGTCAACGATTAGTGTCGCTAGCTTGAAGGCCAACAACTTCACCGTTAATTTCCAAAATCAAGAACTGGATTACAACTATACAAGGATGGTCATGAATTCCACCGGGAGAATTCAGTATCTTGCAAGAAACAGAGCGAATGGAAAATGGAATGTCATCTGGTCGGAACCGGAAAACATATGTGGTGCAGTGTCAACTTGTGGGACCTTTGCTAGCTGTCGAAGTGACACTAAACACACTTGCAGATGCTTGCCTGGGTTTGAACCTAAGTTGAAGGAAGAATGGGATTCTGGTGATTACTCAAATGGGTGCCAGAGAAAATCAGAAATTTGCATCAAAGAAGAGGTTGAAGCTCGAGATTTCTTGACAATAAATATGAAGGTGAGAAAGACATCCAATATTGTCAAAATCAATGGTGTTGAGGAATGTCAAATCAAGTGCCTTGAATCTTGTAAATGTAAAGCATATGTAGAAATTAGTACTATTAGATCTGATACTGTGTGCGGTATTTGGGAAGATGACCTCCAAAGCATTTGGGAATATACCGATGGTGGTGCTAATGTTAACGTCCGTGTCAAACGTTTTGACATAGAATTGACACAACTTGATTGTAAAACATGTGGAAGCAACATTGTCCCTTATCCTCTAAGTTTGAGCACAGAATCCGACTGTGGTAATCCGCTATATCGTAACTTCAGTTGCAACTTTTCCACTGGTCAGATCATCTTTCATACGGCAGATGTTTACTACAATGTCACCAACATCAATCCACAACTAAAAACTTTTACCATTGCAACAAATGGGTCTATCTGCAGAGGTAATGATGCAAATGCAATTCAAAAGCTTCTGAAATTGGAACACTCGTCTACATTCAAAGTAAGCAGCAACTGTAACTCTGAATTCAATGAAATTGATATTCAATGGGAGAAACCATTAGAGCCAATCTGCAGTTCACCAAGAGATTGCACCAATTGGCCTAATTCATTATGCAACTCATCAACAGACGGAACAAAGAGGTGCTTGTGTCATTCTTCTTTTAAATGGATTGGTACAGGCTGCCAAATTCTTCCAGAGGATGGTTTGAATAAGCCACATCCAAGGCAGAGAAATATCAGAGTTAGTATCATTGTCGTCGTGATCATGGCTGGGTTGATTGTTATTTCTTGCTTGGTGTCGTATATTTACTACAAAAGAAGGAAGGTACAACATAAAAAAGAGCAAAGAACAAGTTTTTGGGGAAACCAGGAAACGACTCACTTATATGAAAGTGAGAAACGTATTAGAGACTTTATGGGTTCCGGAATGTTTGGAGAAGATGATAGAAAAGCCATAGAAGTACCCGTTTTTGATTTGGAAACCATACTTATTGCCACAGACAACTTCTCGGAAGCAAACAAAATTGGACGAGGAGGATTTGGGACAGTGTACAAGGGACGTTTCTCGGGAGGACTGGAAATTGCAATAAAGAGGCTGTCGCAAGGTTCAGCCCAAGGCGTAAATGAGTTTAAGAATGAAGCAATTCTGATCGCCAAACTTCAGCATCGAAATCTAGTTAGACTTTTGGGCTATTGTGTTGCAGGAGAAGAGAAAATGTTGGTCTATGAATATATGCCCAACAAAAGCTTAGACTTTTTTATGTTTGATCAAACACAAAGGTTACTGTTGAATTGGGAGATGCGTTTTAATATCATCATCGGCATTGCTCGAGGGCTAGTTTATCTCCATGAAGATTCAAGGTTGAAGATTATTCATAGAGATATGAAAACAAGCAATGTTTTGTTGGACGCAGAAATGAACCCTAAAATTTCCGACTTTGGTTTAGCAAGAATCATTGATGGCAAGCAAACAGAGACAATCACCAACAGAGTTGTTGGAACTTACGGATACATGTCACCTGAATATGCATTGGATGGATCATTCTCGGTGAAATCTGACGTGTTTAGTTACGGTATAGTCGTGTTGGAGATTATTAGTGGAAGAAGGAACACTGGGTTCTACCAATCTAAAGAGGCATTAAACCTTCTTGGATATGTATGGAATTTGTGGAGAGAGAAAAAGGCAATGGAAATAGCAGAGGTGGGCATACGAGAAAGCTGCAATCCAAATGAAGTTGTAAAATGTGTGGGTGTGGGATTGCTTTGTGTGCAAGAAGACCCCAACGATCGTCCCACAATGTCAAATGTAGCTTTTATGTTAAGCTCTGGCAATGACCTTGCTTCGCTTCCAGATCCTAAACAACCAGCTTTCGTTGATAAAAGATTAACTCCTACTTCTTCTGCAACTTCTTCTTTAGGCTTGAAGCAAGAAATTGTAAGCAATGATTATAGCTTACTTGAGCCTCGTTAA 3102 39.62 MVLSLMENKKMKINLFISSLCLSFLLLIWSARGNLINSLSDSNGDSIVSDEGRGNLINSLSDSHGDSIVSDEGRFKLGFFSPHGSSDSRRYVGIWYHDTKPEVVVWVANRNQPLYNNNGSFAIKNGKLMVLASNGTDLWSTKLQFPSDNMTMELMASGNLVIKQSGVKGIIMWQSFHNPTDTFLPGMNIVDDWKLTSWKASDDPSSGNFKFLKDTGGRYIIERLSAQYWVSKEFWQNYSTDTNGKIDEVIDLLSTISVASLKANNFTVNFQNQELDYNYTRMVMNSTGRIQYLARNRANGKWNVIWSEPENICGAVSTCGTFASCRSDTKHTCRCLPGFEPKLKEEWDSGDYSNGCQRKSEICIKEEVEARDFLTINMKVRKTSNIVKINGVEECQIKCLESCKCKAYVEISTIRSDTVCGIWEDDLQSIWEYTDGGANVNVRVKRFDIELTQLDCKTCGSNIVPYPLSLSTESDCGNPLYRNFSCNFSTGQIIFHTADVYYNVTNINPQLKTFTIATNGSICRGNDANAIQKLLKLEHSSTFKVSSNCNSEFNEIDIQWEKPLEPICSSPRDCTNWPNSLCNSSTDGTKRCLCHSSFKWIGTGCQILPEDGLNKPHPRQRNIRVSIIVVVIMAGLIVISCLVSYIYYKRRKVQHKKEQRTSFWGNQETTHLYESEKRIRDFMGSGMFGEDDRKAIEVPVFDLETILIATDNFSEANKIGRGGFGTVYKGRFSGGLEIAIKRLSQGSAQGVNEFKNEAILIAKLQHRNLVRLLGYCVAGEEKMLVYEYMPNKSLDFFMFDQTQRLLLNWEMRFNIIIGIARGLVYLHEDSRLKIIHRDMKTSNVLLDAEMNPKISDFGLARIIDGKQTETITNRVVGTYGYMSPEYALDGSFSVKSDVFSYGIVVLEIISGRRNTGFYQSKEALNLLGYVWNLWREKKAMEIAEVGIRESCNPNEVVKCVGVGLLCVQEDPNDRPTMSNVAFMLSSGNDLASLPDPKQPAFVDKRLTPTSSATSSLGLKQEIVSNDYSLLEPR 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23265474 23270873 + CcPI632755_02g012310.1 Cco02g1231 171988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1231 1033 ProSiteProfiles Bulb-type lectin domain profile. 53 175 IPR001480 -
Cco02g1231 1033 ProSitePatterns Serine/Threonine protein kinases active-site signature. 834 846 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g1231 1033 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 57 999 - -
Cco02g1231 1033 SUPERFAMILY Protein kinase-like (PK-like) 697 1005 IPR011009 -
Cco02g1231 1033 CDD B_lectin 58 179 IPR001480 -
Cco02g1231 1033 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 789 992 - -
Cco02g1231 1033 SMART serkin_6 713 983 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1231 1033 Gene3D - 50 177 IPR036426 -
Cco02g1231 1033 Pfam D-mannose binding lectin 104 199 IPR001480 -
Cco02g1231 1033 CDD STKc_IRAK 719 984 - -
Cco02g1231 1033 ProSiteProfiles PAN/Apple domain profile. 363 447 IPR003609 -
Cco02g1231 1033 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 679 788 - -
Cco02g1231 1033 SUPERFAMILY alpha-D-mannose-specific plant lectins 104 204 IPR036426 -
Cco02g1231 1033 ProSiteProfiles Protein kinase domain profile. 713 1001 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1231 1033 Gene3D Transferase(Phosphotransferase) domain 1 789 993 - -
Cco02g1231 1033 SMART blect_4 59 179 IPR001480 -
Cco02g1231 1033 ProSitePatterns Protein kinases ATP-binding region signature. 719 741 IPR017441 GO:0005524(InterPro)
Cco02g1231 1033 Gene3D Phosphorylase Kinase; domain 1 687 788 - -
Cco02g1231 1033 Pfam PAN-like domain 377 429 IPR003609 -
Cco02g1231 1033 Pfam Protein tyrosine and serine/threonine kinase 716 981 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g1231 1033 Pfam S-locus glycoprotein domain 263 342 IPR000858 GO:0048544(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0155 Cco-Chr2:1580425 Cco02g1231 Cco-Chr2:23265474 2.00E-268 dispersed
Cco02g1231 Cco-Chr2:23265474 Cco03g0535 Cco-Chr3:5490912 7.10E-146 dispersed
Cco02g1231 Cco-Chr2:23265474 Cco04g1777 Cco-Chr4:32703059 8.00E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86568 PF07714 PK_Tyr_Ser-Thr 7.20E-48 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1231 - - - 0.0