Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g1250 | ATGGATCAACTAATTCAACGCGACGATCTTGTTCAGAATCCGGCCACACCCTCCACCTCCATTGTACCATGCATTGAACTTCCAGGCCACCCAATTCGTTCTCAATCCAACTCCAGGTTTGATGGGGAATTCAAGGATTCTGCAGCTGCTAGAAAAGTTCAGAAGGCTGACAGAGAGAAATTAAGAAGGGGTCGTTTGAATGAACAATTTGTCGCGTTGGGAAATATTTTAGATCCCGATAGGCCTAAAAATGACAAAGCAACCATTTTAATGGATACAATTCAATTACTGAAGGATCTGACATCTCAAGTGAACAAATTGAAAACTGAACATGCTACTTTGATAGAAGAATCACACGAGGAAAAGAGTGATCTGAGAGAAGAGAAGGCGTTGCTTACATCTGATATTGAGAATCTTAATGCTCAGTATCAGCAGAAACTCAGGGCTACATACCCTTGGGCTGTCATGGATCACTCGGTTGTCATGGCCCCTGCCCCCTTTCCATTTCCAGTGCCAATGCAAATGCCTCCAGGGCCATTTCCCTTGCATCCATCCTTGCAACCTTATACGTTCTTTGGGAATCCGGATCCCAGGGTAATTGCAAACCCTTGTTCCACCTTCATCCCATACATACCTCCAAATTCCTTGACCGAGCAACAGTCCTCCCAAAATGCACCACCTTTCATTCAGTCAGGCAATTGGTCTGATAACTTCAGTGAGCAAAATTCCAGGAGCAAGTTCTCAGTTGAAAGCAAGATTGAGAAAAGTGTAGATTCCAATGAAGTTGCAACTTACCTGGAGTTGAAAACTCCTGGATCTTCCTCAGATCAGGATTCATCGTTTGAATGTTCAAACGGTAAGAACAGAAAGGAAAATAATCTATCAGAAGAGAGTTCTTCAAGTAGATGTTCTTCATCTTGTAGTTTAGGGGATAATTCGTCTAGTAGCACGCCAAATGGACGAAAATCTACTGATATACGTGGAAACCCATAA | 993 | 42.8 | MDQLIQRDDLVQNPATPSTSIVPCIELPGHPIRSQSNSRFDGEFKDSAAARKVQKADREKLRRGRLNEQFVALGNILDPDRPKNDKATILMDTIQLLKDLTSQVNKLKTEHATLIEESHEEKSDLREEKALLTSDIENLNAQYQQKLRATYPWAVMDHSVVMAPAPFPFPVPMQMPPGPFPLHPSLQPYTFFGNPDPRVIANPCSTFIPYIPPNSLTEQQSSQNAPPFIQSGNWSDNFSEQNSRSKFSVESKIEKSVDSNEVATYLELKTPGSSSDQDSSFECSNGKNRKENNLSEESSSSRCSSSCSLGDNSSSSTPNGRKSTDIRGNP | 330 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 23721953 | 23724428 | - | CcPI632755_02g012500.1 | Cco02g1250 | 172007 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g1250 | 330 | CDD | bHLH_AtILR3_like | 55 | 126 | - | - | |
Cco02g1250 | 330 | SMART | finulus | 56 | 106 | IPR011598 | GO:0046983(InterPro) | |
Cco02g1250 | 330 | MobiDBLite | consensus disorder prediction | 268 | 282 | - | - | |
Cco02g1250 | 330 | MobiDBLite | consensus disorder prediction | 215 | 248 | - | - | |
Cco02g1250 | 330 | Coils | Coil | 90 | 149 | - | - | |
Cco02g1250 | 330 | Pfam | Helix-loop-helix DNA-binding domain | 51 | 100 | IPR011598 | GO:0046983(InterPro) | |
Cco02g1250 | 330 | MobiDBLite | consensus disorder prediction | 268 | 330 | - | - | |
Cco02g1250 | 330 | MobiDBLite | consensus disorder prediction | 215 | 246 | - | - | |
Cco02g1250 | 330 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 49 | 114 | IPR036638 | GO:0046983(InterPro) | |
Cco02g1250 | 330 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 33 | 324 | IPR044579 | GO:0003700(InterPro)|GO:0006879(InterPro) | |
Cco02g1250 | 330 | MobiDBLite | consensus disorder prediction | 297 | 330 | - | - | |
Cco02g1250 | 330 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 50 | 100 | IPR011598 | GO:0046983(InterPro) | |
Cco02g1250 | 330 | Gene3D | - | 47 | 129 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1250 | Cco-Chr2:23721953 | Cco04g1798 | Cco-Chr4:32875983 | 1.60E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58766 | PF00010 | HLH | 4.60E-07 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g1250 | - | - | - | 0.0 |