Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1250 ATGGATCAACTAATTCAACGCGACGATCTTGTTCAGAATCCGGCCACACCCTCCACCTCCATTGTACCATGCATTGAACTTCCAGGCCACCCAATTCGTTCTCAATCCAACTCCAGGTTTGATGGGGAATTCAAGGATTCTGCAGCTGCTAGAAAAGTTCAGAAGGCTGACAGAGAGAAATTAAGAAGGGGTCGTTTGAATGAACAATTTGTCGCGTTGGGAAATATTTTAGATCCCGATAGGCCTAAAAATGACAAAGCAACCATTTTAATGGATACAATTCAATTACTGAAGGATCTGACATCTCAAGTGAACAAATTGAAAACTGAACATGCTACTTTGATAGAAGAATCACACGAGGAAAAGAGTGATCTGAGAGAAGAGAAGGCGTTGCTTACATCTGATATTGAGAATCTTAATGCTCAGTATCAGCAGAAACTCAGGGCTACATACCCTTGGGCTGTCATGGATCACTCGGTTGTCATGGCCCCTGCCCCCTTTCCATTTCCAGTGCCAATGCAAATGCCTCCAGGGCCATTTCCCTTGCATCCATCCTTGCAACCTTATACGTTCTTTGGGAATCCGGATCCCAGGGTAATTGCAAACCCTTGTTCCACCTTCATCCCATACATACCTCCAAATTCCTTGACCGAGCAACAGTCCTCCCAAAATGCACCACCTTTCATTCAGTCAGGCAATTGGTCTGATAACTTCAGTGAGCAAAATTCCAGGAGCAAGTTCTCAGTTGAAAGCAAGATTGAGAAAAGTGTAGATTCCAATGAAGTTGCAACTTACCTGGAGTTGAAAACTCCTGGATCTTCCTCAGATCAGGATTCATCGTTTGAATGTTCAAACGGTAAGAACAGAAAGGAAAATAATCTATCAGAAGAGAGTTCTTCAAGTAGATGTTCTTCATCTTGTAGTTTAGGGGATAATTCGTCTAGTAGCACGCCAAATGGACGAAAATCTACTGATATACGTGGAAACCCATAA 993 42.8 MDQLIQRDDLVQNPATPSTSIVPCIELPGHPIRSQSNSRFDGEFKDSAAARKVQKADREKLRRGRLNEQFVALGNILDPDRPKNDKATILMDTIQLLKDLTSQVNKLKTEHATLIEESHEEKSDLREEKALLTSDIENLNAQYQQKLRATYPWAVMDHSVVMAPAPFPFPVPMQMPPGPFPLHPSLQPYTFFGNPDPRVIANPCSTFIPYIPPNSLTEQQSSQNAPPFIQSGNWSDNFSEQNSRSKFSVESKIEKSVDSNEVATYLELKTPGSSSDQDSSFECSNGKNRKENNLSEESSSSRCSSSCSLGDNSSSSTPNGRKSTDIRGNP 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23721953 23724428 - CcPI632755_02g012500.1 Cco02g1250 172007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1250 330 CDD bHLH_AtILR3_like 55 126 - -
Cco02g1250 330 SMART finulus 56 106 IPR011598 GO:0046983(InterPro)
Cco02g1250 330 MobiDBLite consensus disorder prediction 268 282 - -
Cco02g1250 330 MobiDBLite consensus disorder prediction 215 248 - -
Cco02g1250 330 Coils Coil 90 149 - -
Cco02g1250 330 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983(InterPro)
Cco02g1250 330 MobiDBLite consensus disorder prediction 268 330 - -
Cco02g1250 330 MobiDBLite consensus disorder prediction 215 246 - -
Cco02g1250 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 114 IPR036638 GO:0046983(InterPro)
Cco02g1250 330 PANTHER TRANSCRIPTION FACTOR BHLH121 33 324 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Cco02g1250 330 MobiDBLite consensus disorder prediction 297 330 - -
Cco02g1250 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 100 IPR011598 GO:0046983(InterPro)
Cco02g1250 330 Gene3D - 47 129 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1250 Cco-Chr2:23721953 Cco04g1798 Cco-Chr4:32875983 1.60E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58766 PF00010 HLH 4.60E-07 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1250 - - - 0.0