Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1255 ATGGCGTCGAAGGCCTTCAGGATTTTCTTTCTTGCGTTCCTTCTCCTTGCGTCGCCTTTTTCCCAAGTTGTTAGATGTCAATCGGATGCGGCTGTGGAATCTGACGATGCCGCCGCTGACGATGCCACTGACTTAGGGATTGTTGCGGAGGATGAGCTAGATTTTGGTGATGGGAGCTTCAGCGCAGCTCCAGGGGTTGATACCGTGTGTGTTTTCCCCAAAAATAGCGCACGTATAGTGGTGGCCGGAGAAGAGACTGAACTATTGGCTGGAGTGAAAAATAATGGGGATTCTAGCTTGAATGTCATTGCAATAAAGGCCAGTGTTCATTACACTTTCGATCATCGATTACTGATTCAAAATCTTACCGCACTGACTTTTAACAATGCATCGGTACCAGCATCGTCACAAGCAACTTTCTCATACCTTTTCGCTGTCAGCAAATATCTTCAGTCTGGGAATTTTGATCTTGTTGGAACCATTATCTATGAAATAGATCAGCATCCATATCAAAGTACCTTCTTCAATGGTACCATTGAAGTTGCTGAAGCTAGTGGTTTTCTCAGCATTGAATCTGTATTTCTAGTTACGCTTGGTATTGCACTTATCGTGCTGCTTGGTTTATGGATTCATGGTCAAATACAGAATCTTTCCAAGAAAACCAAGAGGGCTCCTAAGGTTGAAGTTGGAACCAAGGCCTCAGATGCTTCATCAGACGAATGGCTTGAGGGTACTGCTTATTCTCGGTCATCGTCAAACAAATCAAAGAAAAAGAAGTAG 780 43.85 MASKAFRIFFLAFLLLASPFSQVVRCQSDAAVESDDAAADDATDLGIVAEDELDFGDGSFSAAPGVDTVCVFPKNSARIVVAGEETELLAGVKNNGDSSLNVIAIKASVHYTFDHRLLIQNLTALTFNNASVPASSQATFSYLFAVSKYLQSGNFDLVGTIIYEIDQHPYQSTFFNGTIEVAEASGFLSIESVFLVTLGIALIVLLGLWIHGQIQNLSKKTKRAPKVEVGTKASDASSDEWLEGTAYSRSSSNKSKKKK 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23903929 23909913 + CcPI632755_02g012550.1 Cco02g1255 172012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1255 259 Pfam Translocon-associated protein (TRAP), alpha subunit 80 242 IPR005595 GO:0005789(InterPro)
Cco02g1255 259 MobiDBLite consensus disorder prediction 220 259 - -
Cco02g1255 259 PANTHER TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT 10 259 - GO:0005783(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1255 K13249 - - csv:101214090 420.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0472 Cco-Chr2:4259811 Cco02g1255 Cco-Chr2:23903929 2.90E-65 dispersed
Cco02g1253 Cco-Chr2:23777443 Cco02g1255 Cco-Chr2:23903929 8.30E-136 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g38 . . . . . . . . Cmo19g00701 . . . . . Sed05g2290 Cpe04g00103 Cpe15g00561 Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . Cla02g00488 Cam02g0497 Cec02g0498 Cco02g0503 Clacu02g0501 Cmu02g0496 Cre02g0829 Cone12ag1185 Cone8ag1230 . . . Csa07g00034 . Cme01g01347 Blo04g00538 . . . Bpe15g00843 . . . . . . . . . Car19g00533 . . . . . . . . . Cla02g01127 Cam02g1202 Cec02g1205 Cco02g1255 Clacu02g1191 Cmu02g1153 Cre02g1463 . . Chy01g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001891 0 2 1 3 2 2 3 3 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 1 2 5 2 1 67