Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1256 ATGAGGAATCCTCCTCTGTTTGGAAGGGCACCCTTGTTGTGCTTCTTCTTGGTGTCCTTTGTTTTTGCTGCAACCTCGTGCTATGCCGATGTGAAGACGGTCGAGGCCATTGGTGTTGGTGAATGTGCTGACTGCAAAGAGAGTAACATAAAAACTAGCCATGCCCTGTCAGGATTGAAAGTAGCCATAGATTGCAAATCAAGTGATGGGCACTTCAAAACAAGAGGAATTGGAGAGTTGAATGAAGAAGGAAAGTTCAGTGTATTGCTACCTAATGGCATTGTTGAAGATGGAAAGTTGAAGGAAGAATGTTATGCACAGCTTTACAGTGCATCAGCCAACCCTTGCCCTGCCCATGATGACCTTCAATCCTCAAAGTTGGTTTTGTTGTCCAAATCAGATGGAAAACACACCTATGGATTGTCTGGTAAACTCAAGATTTCACCTGGAACTTGTACATCAGCCTTCCTTTGGCCATTTTTCAAGTACCCTCCTCTTCCAAAGTTTCCCCACTTTCCTTTGCCACTCCCTCTTATACCTAAGTTTCACCATCCTCACTTCAAGCATTTTGTTCCCCCATTCTCCTTCCCTGCATTGCCACCTAAAGTGTTCTCTCCTTTTCCACCTAAAGCATTTTCTCCACCTACACCGATCTATGAAAAGCCACTTCCACCGCCGGTTCCAGTTTATGTAAAGCCTCTTCCTCCACCAACACCAGTCTACGAAAAGCCACTCCCACCGCCAGTTCCGGTCTATGTAAAGCCTCTTCCTCCACCTACACCGGTCTATGAAAAGCCACTCCCACCTCCGGTTCCGGTTTATGTAAAGCCTCTTCCTCCACCAACACCGATCTATGAAAAGCCACTTCCACCGCCGGTTCCGGTTTATGTAAAGCCTCTTCCTCCACCAACACCGGTCTATGAAAAGCCACTTCCACCGCCGGTTCCGGTTTATGTAAAGCCTCATCCTCCACCAACACCAGTCTATGAAAAGCCACTTCCACCACCGGTTCCGGTTTATGTAAAGCCTCTTCCTCCACCAACACCGGTCTATGAAAAGCCACTTCCACCGCCGGTTCCGATTTATGTAAAGCCTCATCCTCCACCTACACCAGTCTATGAAAAGACACTCCCACCGCCAGTTCCGGTTTATGTAAAGCCTCATCCTCCACCTACACCGGTCTATGAAAAGCCACTTCCACCACCGGTTCCGGTTTATGTAAAGCCTCTTCCTCCACCAACACCGGTCTATGAAAAGCCACTCCCACCACCAGTTCCAATTTATAAGAAGCCTCTTCCTCCACCAGTGTATGAGAAGCCACTTCCACCACCAGTTCCCATTTACAAAAAACCTCTTCCTCCACCTGTTCCCATTTACAAGAAACCAAATCCTCCACCAGTGCCAATCTACAAGGAGCCACTTCCACCACCGGTTCCTGTTTACAAAAAACCTTGTCCTCCCCCTGTTCCCATTTACAAGAAACCTAATCCTCCACCAACGCCAATATACAAGAAGCCACTTCCACCACCGGTTCCTATTTACACTAAACCTCTTCCTCCACCCGTTCCCATCTACAAGAAACCTAATCCTCCACCAGTGCCAATCTACAAGAAGCCACTCCCACCGCCAGTTCCTATTTACAAGAAACCTCTTCCTCCACCGATACCAATCTACAAGAAGCCTCTTCCACCGCCCGTCCCTGTTTATGAAAAATCTCTTCCTCCACCTTTTCCAATATATGTCCATCCACTCCCACCTCCCATTCCATTTTTCAAGCCAAAACACCCCTTCTTCAAGCATTTGCCTCCCATTCCAAAGATTCCACATCATCCATTTTTTAAGAAGCCATGGCCAACTATCCCTCACTTCCCTTCTGTTCCCAAGTTCCCACCAAAGTACTTTTCCCACCACAAGTTTGGAGGGTTCCCTAAGCATCCACCCTTTGCTTCTCATCCTTAG 1959 47.58 MRNPPLFGRAPLLCFFLVSFVFAATSCYADVKTVEAIGVGECADCKESNIKTSHALSGLKVAIDCKSSDGHFKTRGIGELNEEGKFSVLLPNGIVEDGKLKEECYAQLYSASANPCPAHDDLQSSKLVLLSKSDGKHTYGLSGKLKISPGTCTSAFLWPFFKYPPLPKFPHFPLPLPLIPKFHHPHFKHFVPPFSFPALPPKVFSPFPPKAFSPPTPIYEKPLPPPVPVYVKPLPPPTPVYEKPLPPPVPVYVKPLPPPTPVYEKPLPPPVPVYVKPLPPPTPIYEKPLPPPVPVYVKPLPPPTPVYEKPLPPPVPVYVKPHPPPTPVYEKPLPPPVPVYVKPLPPPTPVYEKPLPPPVPIYVKPHPPPTPVYEKTLPPPVPVYVKPHPPPTPVYEKPLPPPVPVYVKPLPPPTPVYEKPLPPPVPIYKKPLPPPVYEKPLPPPVPIYKKPLPPPVPIYKKPNPPPVPIYKEPLPPPVPVYKKPCPPPVPIYKKPNPPPTPIYKKPLPPPVPIYTKPLPPPVPIYKKPNPPPVPIYKKPLPPPVPIYKKPLPPPIPIYKKPLPPPVPVYEKSLPPPFPIYVHPLPPPIPFFKPKHPFFKHLPPIPKIPHHPFFKKPWPTIPHFPSVPKFPPKYFSHHKFGGFPKHPPFASHP 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23920859 23923987 + CcPI632755_02g012560.1 Cco02g1256 172013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1256 652 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 501 648 - -
Cco02g1256 652 Pfam Pollen protein Ole e 1 like 40 123 - -
Cco02g1256 652 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1256 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0471 Cco-Chr2:4253721 Cco02g1256 Cco-Chr2:23920859 3.30E-43 dispersed
Cco02g1254 Cco-Chr2:23793768 Cco02g1256 Cco-Chr2:23920859 1.90E-16 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g117 . . . . . Bpe12g00110 Bma05g00415 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00465 Csa07g00082 . . . Blo13g00524 . . . . . . . . . . . . . Cpe16g00299 Cpe05g01313 . . . . . . . Cla02g01128 Cam02g1203 Cec02g1206 Cco02g1256 Clacu02g1192 Cmu02g1154 Cre02g1464 . Csa02g01357 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001811 3 2 2 5 2 3 1 3 3 1 3 3 2 2 2 2 3 3 2 2 1 2 1 2 2 1 2 2 2 2 66