Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g1266 | ATGGCGGCAACCGTCTCACCGTGGGGCAAGCCCGGAGCTTGGGCTTTGGATGCGGAGGAGCACGAGGCGGAGCTTCTCAAGGACCAGCAGGACCAGTCTCGCCAGCAATCGGAGCCCAGTGCCGACTTTCCATCTCTCGCCACCGCGGCCGCCACCAAACCTAAGAAGAAGAAAGGTCAGTCCATTCCCTTGTCGGAGTTTCAGACCTATGGCGGTCCGAAGCCGTCCTCTCAATCCAGTGATCCAAAGGGTCTGACCGCTGAAGATCTAATGATGCTTCCGACGGGTCCGCGTCAGAGAACGGCGGAGGAGATGGACCGCAACCGTCTTGGTGGAGGCTTCAAGAGTTGGGGTCAGAATAGTTTGTACGACAGGGGGAATCGGTATTCTAACGCGGAAGATTCACCGAATTCTCGACGGGGTTCTAGGGTTTTTGATGAGTCAAGGAGGAGCAATGATGGATCTGATAGAGAATTCAGAAGGGAATCGTTGCCTTCTAGGGCTGATGAGATTGATGATTGGGGAGCCGGGAAGAAGCCTATGATGGGTAATGGGATTGAGAGGAGGGAGAGAGGTGGAGGAGGAGGTTTTTTCGATTCGCACTCGTCGAAAGCCGACGAATCGGATAGTTGGGTATCGAGTAAGAGCTTTACACCTTCTGAAGGTCGGAGATCAGGCGGTATGGGTGGTGGTTTTGACAGAGAGCGAAGAGGAGGATTTCCCTCGAGCGGTGGTGGCGCCGATTCAGACAGTTGGGGCAGAAAATCTGAAGGGGCTAGAGGTGGAATTGGTGAGAACGGTGGTGGGGCAGATTCGGAAAATTGGGGCAAAAAATCTGAAGGGGTTAGAGTTGGAATTGGTGAGAGGCCGAGGCTTAATCTGCAGCCTCGTTCAATCCCTTTGAGCAATGGGAATCAGGAGGCTTCTGGTGCTGCAGCAAAGCCAAAGGGTTCCAATCCTTTTGGGAATGCAAGACCAAGGGAACAGGTATTGGCTGAAAAGGGGCAAGACTGGAAGAAGATTGATGAGCAACTCGAATCAATGAAAATTAAGGATACGGTGGAGAGAACCGAGAAATCTAGTGGGGCTTCGTTTGAGAGAAAAGGCTTTGGAGTTAGAAGTGGTCGGTCTCCCGAAAATCGGTCAGTAAGGAGTTGGAGGAAGCCAGAGTCTGTGGAGTCTCGTCCCCAAAGTGCTGAGGTGGTTGAAGATGGACCTGCTGAGGATTGA | 1230 | 52.85 | MAATVSPWGKPGAWALDAEEHEAELLKDQQDQSRQQSEPSADFPSLATAAATKPKKKKGQSIPLSEFQTYGGPKPSSQSSDPKGLTAEDLMMLPTGPRQRTAEEMDRNRLGGGFKSWGQNSLYDRGNRYSNAEDSPNSRRGSRVFDESRRSNDGSDREFRRESLPSRADEIDDWGAGKKPMMGNGIERRERGGGGGFFDSHSSKADESDSWVSSKSFTPSEGRRSGGMGGGFDRERRGGFPSSGGGADSDSWGRKSEGARGGIGENGGGADSENWGKKSEGVRVGIGERPRLNLQPRSIPLSNGNQEASGAAAKPKGSNPFGNARPREQVLAEKGQDWKKIDEQLESMKIKDTVERTEKSSGASFERKGFGVRSGRSPENRSVRSWRKPESVESRPQSAEVVEDGPAED | 409 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 24054962 | 24056879 | + | CcPI632755_02g012660.1 | Cco02g1266 | 172023 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g1266 | 409 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B | 1 | 395 | IPR010433 | GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER) | |
Cco02g1266 | 409 | Coils | Coil | 16 | 36 | - | - | |
Cco02g1266 | 409 | MobiDBLite | consensus disorder prediction | 62 | 84 | - | - | |
Cco02g1266 | 409 | MobiDBLite | consensus disorder prediction | 352 | 409 | - | - | |
Cco02g1266 | 409 | Pfam | Plant specific eukaryotic initiation factor 4B | 7 | 363 | IPR010433 | GO:0003743(InterPro) | |
Cco02g1266 | 409 | MobiDBLite | consensus disorder prediction | 18 | 336 | - | - | |
Cco02g1266 | 409 | MobiDBLite | consensus disorder prediction | 380 | 394 | - | - | |
Cco02g1266 | 409 | MobiDBLite | consensus disorder prediction | 120 | 138 | - | - | |
Cco02g1266 | 409 | MobiDBLite | consensus disorder prediction | 139 | 176 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1266 | Cco-Chr2:24054962 | Cco08g1938 | Cco-Chr8:30272691 | 5.80E-27 | dispersed | |
Cco02g0469 | Cco-Chr2:4227575 | Cco02g1266 | Cco-Chr2:24054962 | 2.70E-95 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g1266 | K03258 | - | csv:101214573 | 687.952 |