Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1266 ATGGCGGCAACCGTCTCACCGTGGGGCAAGCCCGGAGCTTGGGCTTTGGATGCGGAGGAGCACGAGGCGGAGCTTCTCAAGGACCAGCAGGACCAGTCTCGCCAGCAATCGGAGCCCAGTGCCGACTTTCCATCTCTCGCCACCGCGGCCGCCACCAAACCTAAGAAGAAGAAAGGTCAGTCCATTCCCTTGTCGGAGTTTCAGACCTATGGCGGTCCGAAGCCGTCCTCTCAATCCAGTGATCCAAAGGGTCTGACCGCTGAAGATCTAATGATGCTTCCGACGGGTCCGCGTCAGAGAACGGCGGAGGAGATGGACCGCAACCGTCTTGGTGGAGGCTTCAAGAGTTGGGGTCAGAATAGTTTGTACGACAGGGGGAATCGGTATTCTAACGCGGAAGATTCACCGAATTCTCGACGGGGTTCTAGGGTTTTTGATGAGTCAAGGAGGAGCAATGATGGATCTGATAGAGAATTCAGAAGGGAATCGTTGCCTTCTAGGGCTGATGAGATTGATGATTGGGGAGCCGGGAAGAAGCCTATGATGGGTAATGGGATTGAGAGGAGGGAGAGAGGTGGAGGAGGAGGTTTTTTCGATTCGCACTCGTCGAAAGCCGACGAATCGGATAGTTGGGTATCGAGTAAGAGCTTTACACCTTCTGAAGGTCGGAGATCAGGCGGTATGGGTGGTGGTTTTGACAGAGAGCGAAGAGGAGGATTTCCCTCGAGCGGTGGTGGCGCCGATTCAGACAGTTGGGGCAGAAAATCTGAAGGGGCTAGAGGTGGAATTGGTGAGAACGGTGGTGGGGCAGATTCGGAAAATTGGGGCAAAAAATCTGAAGGGGTTAGAGTTGGAATTGGTGAGAGGCCGAGGCTTAATCTGCAGCCTCGTTCAATCCCTTTGAGCAATGGGAATCAGGAGGCTTCTGGTGCTGCAGCAAAGCCAAAGGGTTCCAATCCTTTTGGGAATGCAAGACCAAGGGAACAGGTATTGGCTGAAAAGGGGCAAGACTGGAAGAAGATTGATGAGCAACTCGAATCAATGAAAATTAAGGATACGGTGGAGAGAACCGAGAAATCTAGTGGGGCTTCGTTTGAGAGAAAAGGCTTTGGAGTTAGAAGTGGTCGGTCTCCCGAAAATCGGTCAGTAAGGAGTTGGAGGAAGCCAGAGTCTGTGGAGTCTCGTCCCCAAAGTGCTGAGGTGGTTGAAGATGGACCTGCTGAGGATTGA 1230 52.85 MAATVSPWGKPGAWALDAEEHEAELLKDQQDQSRQQSEPSADFPSLATAAATKPKKKKGQSIPLSEFQTYGGPKPSSQSSDPKGLTAEDLMMLPTGPRQRTAEEMDRNRLGGGFKSWGQNSLYDRGNRYSNAEDSPNSRRGSRVFDESRRSNDGSDREFRRESLPSRADEIDDWGAGKKPMMGNGIERRERGGGGGFFDSHSSKADESDSWVSSKSFTPSEGRRSGGMGGGFDRERRGGFPSSGGGADSDSWGRKSEGARGGIGENGGGADSENWGKKSEGVRVGIGERPRLNLQPRSIPLSNGNQEASGAAAKPKGSNPFGNARPREQVLAEKGQDWKKIDEQLESMKIKDTVERTEKSSGASFERKGFGVRSGRSPENRSVRSWRKPESVESRPQSAEVVEDGPAED 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24054962 24056879 + CcPI632755_02g012660.1 Cco02g1266 172023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1266 409 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 395 IPR010433 GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)
Cco02g1266 409 Coils Coil 16 36 - -
Cco02g1266 409 MobiDBLite consensus disorder prediction 62 84 - -
Cco02g1266 409 MobiDBLite consensus disorder prediction 352 409 - -
Cco02g1266 409 Pfam Plant specific eukaryotic initiation factor 4B 7 363 IPR010433 GO:0003743(InterPro)
Cco02g1266 409 MobiDBLite consensus disorder prediction 18 336 - -
Cco02g1266 409 MobiDBLite consensus disorder prediction 380 394 - -
Cco02g1266 409 MobiDBLite consensus disorder prediction 120 138 - -
Cco02g1266 409 MobiDBLite consensus disorder prediction 139 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1266 Cco-Chr2:24054962 Cco08g1938 Cco-Chr8:30272691 5.80E-27 dispersed
Cco02g0469 Cco-Chr2:4227575 Cco02g1266 Cco-Chr2:24054962 2.70E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1266 K03258 - csv:101214573 687.952