Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1270 ATGACCCAACCCTCAACGTTAGGTCAGGCCTGCAAACAAGCCCATGACAACCAACGGAAGGGCATGATCACTCCACTCGTTGACCGAAAAAACCTGGTTAATGAGGTGAGCTCCCATGGCTGCCCAAAGCTTTCCCCTTTACATATCCAACTTGCCTTCTACCAAAACAAACTCACCTCCAGGCAACTAGGCGAGTTCAGCCTCAAACAAGTGCGTAGATTTAACCCCATTCTGAAAGGGATCATAGAACTGAATCTAGATGCTCTAGACCAAGCCTCCGTAGCCGACAACCAGCGCAAGAGAAACTCGCCAAGCTCTTTGTCTCCATTGCACGGCCTTCCTGTACTTCTGAAAGATAACATTGCAACCAAGGATAAACTCAACAGAACGGCTGGCTCTTTTGCTCTGCTTGGCTCCATCGTTCCTCGTGATGCAGGGGTGGTGACCAAGTCAAGGAAGGCAGGTGCAATTATCTTTGGGAAAGCGAGCCTGAGCGAGTGGTCTGATTTCAGGTCCTATGAATCCTCCAATGGTTGGAGCGCTAGGGGTGGCCAAGGGAAGAATCCTTCCACCACAGGAGAACCTTGTGGCTCGAGTAGCGGCTCTGCCATATCCGTTGCAGCAAATATGGTAACAGTTTCACTGGGAACCGAAACTGATGGACTAATATTATGCCCTTCTACTCTCAGTTCAGTAGTTGGCATTAAACCCACAGTAGGTCTCACCAGTCGAGCAGGGGTCGTTCCAATCTCTTTGAGGCAGGACACTATCGGGAGGGGACAGATCGATAACTCAACAATTGAAGCATCAAAATACATTCCAAAAGGTGAATATGGCCAATTTCTAAGGGCTGATAGGCTGAAAGGAAAGAGAATAGGAACCGTGAGGAAATTTTACGATTTTGGTCATGATGATGCCTTTTACCCCGGAGCTTTTGAGAAAGTTTTCAAAACCCTGAATCAAGGAGGAGCAATATTGGTGGACAATCTGACGATAGAGAGCCTACATGTAATCACTGGCGGCTCAAGTGGAGAGTGGACTGCATTGCTCGCCAAGTCCAAAATATCCCTAAATGAATACCTCAAAGAGCTAGTTGCTTCTCCAATTCGATCCTTGTCAGATGCAATAGAATTCAACAAAAAGAACTCAAAACTTGACGGATATGAGAGATTGATGATTAAGAATAAGCTTGATGCAATAGCAGCTCCCGGTCGGTTAATCTCTCCTATTCTTCCAATTGGAGGTTTCCCTCAGTTAGTGTACCAGCTGGATATAACTCCCTATGGCATCGACTTTGGGGGATTAAAAGGGTTCGAGCCAAGGCTGATAGAGATTGCATATGGATTTGAGCATTTGACTAAGAGTAGAAAGTCCCCTTCAATGAAGAGACGTTAA 1395 46.38 MTQPSTLGQACKQAHDNQRKGMITPLVDRKNLVNEVSSHGCPKLSPLHIQLAFYQNKLTSRQLGEFSLKQVRRFNPILKGIIELNLDALDQASVADNQRKRNSPSSLSPLHGLPVLLKDNIATKDKLNRTAGSFALLGSIVPRDAGVVTKSRKAGAIIFGKASLSEWSDFRSYESSNGWSARGGQGKNPSTTGEPCGSSSGSAISVAANMVTVSLGTETDGLILCPSTLSSVVGIKPTVGLTSRAGVVPISLRQDTIGRGQIDNSTIEASKYIPKGEYGQFLRADRLKGKRIGTVRKFYDFGHDDAFYPGAFEKVFKTLNQGGAILVDNLTIESLHVITGGSSGEWTALLAKSKISLNEYLKELVASPIRSLSDAIEFNKKNSKLDGYERLMIKNKLDAIAAPGRLISPILPIGGFPQLVYQLDITPYGIDFGGLKGFEPRLIEIAYGFEHLTKSRKSPSMKRR 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24087080 24090177 + CcPI632755_02g012700.1 Cco02g1270 172027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1270 464 Gene3D Amidase signature (AS) domain 10 259 IPR036928 -
Cco02g1270 464 Gene3D Amidase signature (AS) domain 260 461 IPR036928 -
Cco02g1270 464 Pfam Amidase 66 258 IPR023631 -
Cco02g1270 464 SUPERFAMILY Amidase signature (AS) enzymes 46 457 IPR036928 -
Cco02g1270 464 PANTHER AMIDASE 386 462 - -
Cco02g1270 464 MobiDBLite consensus disorder prediction 1 20 - -
Cco02g1270 464 MobiDBLite consensus disorder prediction 178 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1270 K01426 - - csv:101215057 620.928
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0467 Cco-Chr2:4216638 Cco02g1270 Cco-Chr2:24087080 1.10E-118 dispersed
Cco02g1270 Cco-Chr2:24087080 Cco03g1754 Cco-Chr3:32252870 4.80E-09 dispersed
Cco02g1268 Cco-Chr2:24072673 Cco02g1270 Cco-Chr2:24087080 1.00E-141 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g123 . . . . . . . . Cmo19g00736 Cmo11g01729 . . . . . . Cpe15g00582 . . . . . . . . . . . . . . Cone12ag1217 Cone8ag1270 . . . Csa07g00085 Chy11g00286 . Blo04g00557 . . . . . Bma03g00597 . . . . . . . Car19g00556 . . Bhi10g01881 Tan05g1178 . . Hepe08g0269 . . Cla02g01140 Cam02g1217 Cec02g1224 Cco02g1270 Clacu02g1199 Cmu02g1168 Cre02g1475 . Csa02g01363 . Cme11g00409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000457 1 5 3 2 1 4 2 4 4 5 3 4 2 5 6 2 4 6 1 5 5 5 4 5 4 1 5 4 8 7 117