Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1280 ATGGGTTCTTTGAAGCTGCCGCCTTCGACGACGGTGCTGAAATGGCTGGGGTTTGTCTCCGCCGTGTGGGTTCAGGCCATTTCCGGAAACAACTATACTTTTTCAAACTACTCCGACTCCCTCAAATCTCTGATGAATCTAACCCAACTTCAGCTCAATAATCTCTCCGTCGCTAAAGACGTCGGAAAAGCCTTCGGACTTCTCGCCGGAATCGCCTGTGACCGGTTTCCCACATGGGTGATCCTGCTTATTGGATCTCTTGAAGGTCTTCTTGGCTATGGTGCTCAGTGGCTTGTCGTTAGCCAAAGGATTTCTCCTCTTCCTTATTGGCAGATGTGCATCTTCTTGTGTTTGGGCGGAAACAGCACGACATGGATGAACACGGCGGTGCTAGTAACTTGCATCAGAAACTTCCGGAAAAATCGCGGCCCAGTTTCCGGCATTCTCAAAGGCTACGTCGGCCTCAGCACCGCCATTTTCACCGATCTCTGTACTGCTCTGTTTTCCTCCGACCCATCTTCTTTCCTCATCATGCTCGCTTTTGTCCCCTTCGCCGTCTGTCTCTTCGCCATGTTCTTCCTCCGCGAAATCCCACCTCCAACCACCGCCGCCGATACCCAACAAGAATCCAATTACTTCTCCGTCTTCAACGCTCTCGCCGTCGTCGTCGCCGTCTATCTCTTATGCTTCGATTTCATCAAAAACTCCGGCAGGCTCTTCTCCCAAATATTCTCCATCGGCCTACTGATTCTCCTCGGATCCCCTTTGATCATCCCAATTTACACATTTTTCAAGAGCTGGCACTCGAATCGAGCCGGATCGGATCTGGAAGCTCGAATTGAGGAGCCGCTACTGAAAGAAGAGGCAGTTGCGGCGCCGGTAAAGGAGGAAGCAGAGGAAATTGCAGAGGTAGAGCAGAGAGCGCCGGTGATCGGAGAAGAACACACGATTTTTGAAGCGGTGAGAACAATTGATTTCTGGGTGTTGTTCGTGTCGTTTCTGTGTGGAGTTGGAACGGGATTGGCGGTGATGAACAATATGGGTCAGATCGGATTGGCTCTGGGTTACGCCGATGTTTCAGTGTTCGTTTCTCTCACAAGTATTTGGGGATTTTTCGGCCGGATTCTTTCCGGAACACTTTCCGAGCATTTTCTCAAAAAAGTAGGCACACCAAGACCTCTATGGAACGCTGCATCTCAAATTTTAATGACCGTTGGATATGTTTTGATGGCCATGGCAATGCCGGGTTCCCTCTACGTCGGCTCGGTCATCGTCGGGATCTGCTACGGCGTTCGTCTCTCCGTCACTGTCCCCACTGCCTCTGAGCTCTTCGGTCTCAAATACTACGGTCTCATCTACAACATTCTCATCCTCAACCTCCCAATCGGATCCTTCCTCTTCTCCGGGCTCCTTGCAGGGTTTCTCTACGACATGGAAGCGACCCCGACCGAGGGCGGCGGGAACACGTGCATCGGAGGGCATTGCTACAGAATTGTGTTTGTTGTGATGGCGTTGGCTTGTGTAATTGGGTTTGTTTTGGACATTTGGTTGGCATGTAGAACCAAAGAGCTTTATTCTAAGCTTAAAGCCAACAAGAAATCAAAGAAGGGAAACAACAATAACAACTCCTAG 1632 50.31 MGSLKLPPSTTVLKWLGFVSAVWVQAISGNNYTFSNYSDSLKSLMNLTQLQLNNLSVAKDVGKAFGLLAGIACDRFPTWVILLIGSLEGLLGYGAQWLVVSQRISPLPYWQMCIFLCLGGNSTTWMNTAVLVTCIRNFRKNRGPVSGILKGYVGLSTAIFTDLCTALFSSDPSSFLIMLAFVPFAVCLFAMFFLREIPPPTTAADTQQESNYFSVFNALAVVVAVYLLCFDFIKNSGRLFSQIFSIGLLILLGSPLIIPIYTFFKSWHSNRAGSDLEARIEEPLLKEEAVAAPVKEEAEEIAEVEQRAPVIGEEHTIFEAVRTIDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYADVSVFVSLTSIWGFFGRILSGTLSEHFLKKVGTPRPLWNAASQILMTVGYVLMAMAMPGSLYVGSVIVGICYGVRLSVTVPTASELFGLKYYGLIYNILILNLPIGSFLFSGLLAGFLYDMEATPTEGGGNTCIGGHCYRIVFVVMALACVIGFVLDIWLACRTKELYSKLKANKKSKKGNNNNNS 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24409518 24413549 - CcPI632755_02g012800.1 Cco02g1280 172037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1280 543 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 14 528 - GO:0016020(PANTHER)
Cco02g1280 543 Gene3D MFS general substrate transporter like domains 284 540 IPR036259 -
Cco02g1280 543 CDD MFS_Mch1p_like 13 510 - -
Cco02g1280 543 SUPERFAMILY MFS general substrate transporter 14 522 IPR036259 -
Cco02g1280 543 Gene3D MFS general substrate transporter like domains 10 208 IPR036259 -
Cco02g1280 543 Pfam Nodulin-like 14 260 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1280 Cco-Chr2:24409518 Cco10g1983 Cco-Chr10:33350382 8.10E-85 dispersed
Cco06g0062 Cco-Chr6:579238 Cco02g1280 Cco-Chr2:24409518 1.10E-66 transposed
Cco07g1201 Cco-Chr7:25880517 Cco02g1280 Cco-Chr2:24409518 3.50E-70 transposed
Cco07g1312 Cco-Chr7:27216412 Cco02g1280 Cco-Chr2:24409518 3.20E-92 transposed
Cco11g0731 Cco-Chr11:8081080 Cco02g1280 Cco-Chr2:24409518 3.60E-86 transposed
Cco02g0460 Cco-Chr2:4166174 Cco02g1280 Cco-Chr2:24409518 9.10E-211 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1280 - - - 0.0