Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1281 ATGCCTCGAGGATTTTCTTTGTTGTATCAGCCACGATGCCTCCTCCTCTTGATCATCTTTCTCGTTTTCCTGGTTTTCGCGCTGTTTAATCACAATCAAAGGGAGGAGAAACTAGAAGAAGAGCCTGAAATTACCCACAGGGTTTACTTGGATGTTGATATTGATGAACAGAGATTAGGTAGAATCGTGATTGGATTATATGGCCAGGTTGTGCCCAAAACTGTAGAAAATTTTAGGGCTCTATGCACAGGGGAGAAAGGTAAAACTACAAGTGGAAAAGCACTCCACTATAAAGGAACACCGTTCCATCGTATTATATCTGGTTTCATGATTCAAGGTGGGGATATTTTATATGGTGATGGAAAAGGATATGAATCAATCTATGGTGGTACATTTGCTGATGAGAACTTCAAAATAAAACATTCACATGCAGGTGTTGTCTCCATGGTAAACTCAGGACCTGATTCAAATGGCTCACAATTTTTCATTACCACCATTAAGTCCAGCTGGTTAGATGGAGAGCACGTTGTCTTTGGCAAGGTCATCCAAGGAATGGACTATGTATATGCAATTGAAGGCGGAGCAGGAACCTATAGTGGGAAACCTAGAAAGAAGGTTACCATTGCTGACAGTGGGGAGATACCCAAGAGCAAGTGGGATGAGGAAACATGA 672 41.67 MPRGFSLLYQPRCLLLLIIFLVFLVFALFNHNQREEKLEEEPEITHRVYLDVDIDEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGKTTSGKALHYKGTPFHRIISGFMIQGGDILYGDGKGYESIYGGTFADENFKIKHSHAGVVSMVNSGPDSNGSQFFITTIKSSWLDGEHVVFGKVIQGMDYVYAIEGGAGTYSGKPRKKVTIADSGEIPKSKWDEET 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24465421 24469168 + CcPI632755_02g012810.1 Cco02g1281 172038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1281 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 102 114 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco02g1281 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 66 81 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco02g1281 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 188 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco02g1281 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 145 160 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco02g1281 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 160 172 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco02g1281 223 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 45 214 - GO:0043231(PANTHER)
Cco02g1281 223 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 97 114 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Cco02g1281 223 Gene3D - 34 220 IPR029000 -
Cco02g1281 223 SUPERFAMILY Cyclophilin-like 43 214 IPR029000 -
Cco02g1281 223 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 52 211 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco02g1281 223 FunFam Peptidyl-prolyl cis-trans isomerase 34 220 - -
Cco02g1281 223 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 49 213 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1281 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1281 Cco-Chr2:24465421 Cco07g0429 Cco-Chr7:4806761 1.80E-62 dispersed
Cco02g1281 Cco-Chr2:24465421 Cco02g2090 Cco-Chr2:33780555 2.90E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g142 . Blo15g00374 Bda06g00481 . Bpe07g00720 . Bma05g00416 Bma12g00927 . . Cma02g00244 . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00483 . Chy11g00269 . . . . . . . . . Sed01g0205 Cmo02g00246 . . . . . . Cpe05g01381 Bhi10g01864 Tan05g1156 Cmetu11g0137 . Hepe08g0282 . . Cla02g01156 Cam02g1232 Cec02g1241 Cco02g1281 Clacu02g1213 Cmu02g1182 Cre02g1491 . Csa02g01379 . Cme11g00391
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012364 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 1 29