Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1285 ATGGCCGCTTTTCTCTCCACTTCTCTTTCCCCTTTCTTCTTCCTTCTTCTCTTAATCCTTCTCTCTACAGTTTCAGCCGATTCGCCATTGAAGACCTTCATCTTCCGTGTCGACCGTTTCTCTAAACCCTCTGTTTTTCCTACCCATTACCACTGGTACACTTCCGAGTTCGCCGAATCCCCCAAAATCCTCCATGTTTACGACACTGTCTTCCACGGATTCTCTGCAACTTTAACTCAAGACCAAGTCGATTCCATCGGAAAACACCCTTCTGTGCTCGCCGTTTTTGAGGACCGTCGTCGTCAGCTTCACACCACCCGTTCCCCTCAATTTCTCGGCCTTCGAAACCAGCGTGGTCTCTGGTCTGATTCCGATTACGGCTCCGATGTAATCATTGGAGTTTTCGATACTGGGATTTCGCCTGAACGACGAAGCTTCTCCGATGTGAATTTGGGGCCGATTCCTCGCCGGTGGAAAGGGGTTTGTGAGACTGGAACTAAGTTCACGGCCAAGAACTGTAACAGGAAGATCGTTGGTGCGAGGTTTTTCTCTAAGGGTCATGAAGCAGGGTCCAACGCTGCCGGTCCGATTATTGGGATAAACGATACGATTGAGTACAGATCTCCGAGAGACGCTGACGGCCATGGGACACATACGGCGTCGACGGCGGCCGGACGGCACGCGTTTCAGGCTAGTCTGGAGGGTTATGCTTCTGGCATAGCAAAGGGCGTGGCCCCTAAGGCGCGTTTAGCGGTTTACAAAGTTTGTTGGAAAAACTCGGGTTGTTTTGATTCCGATATTCTCGCGGCGTTTGATGCTGCGGTTAACGACGGCGTCGACGTCATTTCGATCTCAATTGGAGGCGGCGATGGCGTTTCCTCACCGTATTATCTTGACCCAATTGCAATCGGAGCGTACGGCGCGGCTTCCAGGGGTGTTTTCGTTTCGTCTTCGGCTGGGAACGATGGACCCAATGGAATGTCAGTGACGAACTTGGCGCCGTGGGTTACGACGGTTGGAGCAGGTACGATCGATCGGAATTTCCCGGCGGTGGTGACTCTGGGAAACGGACGGAAGATTTCCGGGGTATCGCTCTACGCTGGAGCGCCGTTGAACGGTACAATGTATCCATTGGTTTACCCTGGGAAATCGGGAGTGCTCTCTGTTTCGCTCTGTATGGAGAATTCGCTCGATCCTAAGGCTGTTGCTGGAAAAATTGTGATCTGCGACAGGGGAAGTAATCCCAGAGTGGCTAAGGGTTTGGTCGTGAAGAAAGCCGGCGGCGTCGGAATGATTCTAGCAAACGGAATCTCAAACGGCGAAGGACTCGTCGGCGATGCCCATCTTCTTCCCGCCTGCGCAGTTGGCTCCGACGAAGGCGATGCCATGAAAGCCTACGCATCGTCCTCCGCAAATCCCACCGCCACCATCGCCTTCCAAGGCACTATAATCGGAATCAAACCGGCGCCAGTTGTGGCTTCGTTTTCCGCCAGAGGGCCAAACGGATTAAACCCGGAAATTCTAAAACCAGACTTAATCGCACCAGGGGTTAACATTCTCGCCGCCTGGACCGACGCCGTTGGTCCAACCGGTTTGGACTTCGATACACGAAAAACAGAGTTCAACATCTTGTCCGGTACATCAATGGCTTGCCCCCATGTAAGTGGAGCTGCTGCTCTGTTGAAATCAGCTCACCCAGATTGGAGTCCAGCAGCGTTAAGATCCGCCATGATGACCACCGCAAGTATTACCGATAACCGCCGCCAACCAATGACGGAAGAATCCACCGGAAAAGCTTCAACTCCTTACGATTTCGGTGCCGGACATGTAAATTTGGGGCTCGCAATGGACCCAGGTCTAGTCTACGACATTACGAACGCCGATTACATAAACTTCTTATGCTCAATCGGGTACGGACCGAAGATGATTCAGGTAATAACAAGAAAACCCGTGACATGTCCGGCGAAAAAACCATTACCGGAAAATCTCAATTACCCATCAATCGTAGCAGTATTTTCTAGTCTATCAAAAGGGTGGTCGACGAAGTCGTTTATCCGAACGGCGACGAACGTGGGTCCATCAAATTCAGTGTACAGAGCTAAAATCGAAGCTCCAAAGGGGGTTACAGTGAAGGTAAAACCATCGAAACTGGTATTTTCATCGACGGTGAAGAAACAGAGCTTCGTAGTGGCAATATCAGCCGACAATCAGAATCTGGCTCTGGGCGATGTGGGCGCTGTTTTTGGTTGGCTTTCTTGGTCCGATGGAAAACATGTGGTTCGTAGCCCACTGGTAGTGACCCAATTAGAGCCTTTGTAA 2319 51.32 MAAFLSTSLSPFFFLLLLILLSTVSADSPLKTFIFRVDRFSKPSVFPTHYHWYTSEFAESPKILHVYDTVFHGFSATLTQDQVDSIGKHPSVLAVFEDRRRQLHTTRSPQFLGLRNQRGLWSDSDYGSDVIIGVFDTGISPERRSFSDVNLGPIPRRWKGVCETGTKFTAKNCNRKIVGARFFSKGHEAGSNAAGPIIGINDTIEYRSPRDADGHGTHTASTAAGRHAFQASLEGYASGIAKGVAPKARLAVYKVCWKNSGCFDSDILAAFDAAVNDGVDVISISIGGGDGVSSPYYLDPIAIGAYGAASRGVFVSSSAGNDGPNGMSVTNLAPWVTTVGAGTIDRNFPAVVTLGNGRKISGVSLYAGAPLNGTMYPLVYPGKSGVLSVSLCMENSLDPKAVAGKIVICDRGSNPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACAVGSDEGDAMKAYASSSANPTATIAFQGTIIGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTDAVGPTGLDFDTRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAALRSAMMTTASITDNRRQPMTEESTGKASTPYDFGAGHVNLGLAMDPGLVYDITNADYINFLCSIGYGPKMIQVITRKPVTCPAKKPLPENLNYPSIVAVFSSLSKGWSTKSFIRTATNVGPSNSVYRAKIEAPKGVTVKVKPSKLVFSSTVKKQSFVVAISADNQNLALGDVGAVFGWLSWSDGKHVVRSPLVVTQLEPL 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24506518 24508836 + CcPI632755_02g012850.1 Cco02g1285 172042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1285 772 CDD Peptidases_S8_3 102 582 IPR034197 -
Cco02g1285 772 Gene3D - 633 769 - -
Cco02g1285 772 Pfam Subtilase family 127 594 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco02g1285 772 Pfam PA domain 376 462 IPR003137 -
Cco02g1285 772 SUPERFAMILY Subtilisin-like 103 620 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco02g1285 772 ProSitePatterns Serine proteases, subtilase family, serine active site. 546 556 IPR023828 -
Cco02g1285 772 SUPERFAMILY PA domain 390 469 IPR046450 -
Cco02g1285 772 FunFam subtilisin-like protease SBT1.5 345 484 - -
Cco02g1285 772 Gene3D Peptidase S8/S53 domain 129 629 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco02g1285 772 PRINTS Subtilisin serine protease family (S8) signature 127 146 IPR015500 -
Cco02g1285 772 PRINTS Subtilisin serine protease family (S8) signature 211 224 IPR015500 -
Cco02g1285 772 PRINTS Subtilisin serine protease family (S8) signature 545 561 IPR015500 -
Cco02g1285 772 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 60 764 IPR045051 -
Cco02g1285 772 CDD PA_subtilisin_like 351 477 - -
Cco02g1285 772 Pfam Peptidase inhibitor I9 42 104 IPR010259 -
Cco02g1285 772 FunFam Subtilisin-like protease SBT1.5 633 769 - -
Cco02g1285 772 Gene3D - 345 484 - -
Cco02g1285 772 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 104 IPR037045 -
Cco02g1285 772 ProSiteProfiles Serine proteases, subtilase domain profile. 102 616 - -
Cco02g1285 772 Pfam Fibronectin type-III domain 662 766 IPR041469 -
Cco02g1285 772 FunFam Subtilisin-like protease SBT1.5 129 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1285 Cco-Chr2:24506518 Cco09g0134 Cco-Chr9:1183102 6.70E-242 dispersed
Cco02g1285 Cco-Chr2:24506518 Cco04g1491 Cco-Chr4:30320425 4.50E-214 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1285 - - - 0.0