Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1292 ATGGAAACTCGGAGCAGAAAGCGGGCGGAGGCCTCCTCAGCAGCCCCTTCTTCTTCGTCTTCTGGTCCAACAACCCGTTCTACCAAGCGCGCACGTCTCTCTGGTACTTCTCCGTCGAATCTTGCTGCATCCACTCTTTCGATCACAACACGTTCTCGCTCTACCCGAACCCAAGAACCGTCTGCCACCAGTACTCCAATGGACTCGACTAATGAATCATCAGGGTCACGCCGACGCGGGAAGAATTCTGATAAAGAAAACTCGGATAAGGGGAAGGAGAAGGAACACGAGGTTAGAATCGGGGATAGAGAAAGGAATGCTGAGCAGAGTTTTGGGCTAAATATTGAAGGTAGTGGCGGTGGGGAGGATGATGATAACGACGACAGTGAAGGAGGAATGGGAGTCTTGCAGCAGAATTTATCCACAGCGAGTAGCGCCCTTCAAGGACTTCTCAGGAAACTCGGTGCTGGACTGGATGATTTACTTCCATCTTCTGCAATTGCATCGGCTTCATCCTCACAGCAGAGAGGACGGCTTAAGAAGATCTTATCTGGGTTGAGAGCGGATGGAGAAGAAGGGAGGCAGGTTGAGGCATTGACACAGCTCTGTGAGATGCTCTCAATCGGAACTGAGGAGTCTCTAAGTACTTTCTCTGTTGATTCCTTCGTCCCTGTCCTTGTTGGGTTACTTAATCACGAAAGCAATCCTGATATAATGCTTCTAGCGGCTAGGGCACTAACCCATCTGTGCGATGTCCTCCCTTCATCATGTGCTGCTGTCGTGCATTATGGTGCTGTTTCCTGCTTCTGTGCGAGATTGCTGACTATAGAATACATGGACCTAGCTGAACAGTCCCTGCAAGCTTTAAAGAAGATATCCCAGGAACACCCTACTGCTTGCCTGCGGGCTGGTGCTCTTATGGCCGTGCTTTCATATTTAGATTTCTTCTCTACAGGAGTTCAGCGAGTCGCATTGTCCACTGCTGCTAATATGTGCAAGAAGCTTCCTTCGGATGCAGCTGACTTTGTGATGGAAGCTGTTCCCCTGCTGACAAACCTTCTTCAGTATCATGATGCAAAAGTGTTGGAGCATGCTTCAGTTTGTTTGACTCGTATTGCGGAGGCCTTTGCCTCATCTCCGGATAAATTAGATGAACTATGTAACCATGGACTTGTTACACAAGCTGCCTCACTTATTTCCACCAGCAGTACTGGAGGTGGACAGTCAACTCTTGGCTCAGCTACTTACACAGGATTAATCCGACTTCTTTCCACATGTGCAAGTGGATCTGCCTTAGGTGCAAAAACTTTGCTGCTTCTTGGGATCAGTGGGATTCTTAAAGATATATTATCTGGTTCTGGCGTGTCTACTAATGCATCTGTTTCACCTGCATTAAATAGACCACAAGAGCAGATTTTTGAGATAGTCAACTTGGCAAATGAGCTTCTACCTCCTCTACCTCAAGGAACTATTTCCTTTCCACCCAACTTTAATTTGTTTGTGAAAGGACCCGTCATCAAGAAGCCATCTACTAGTGGTTCTGTGAAAGAAGAAGATCCAACTGATAGTGCTCCAGAAGTGTCAGCTCGTGAGAAACTCTTAAAGGATCAGCCTGAGCTCCTCCTCCAGTTTGGAATGGATCTCCTTCCTATTTTAATACAGATCTATGGTTCCAGTGTGAATGGTCCAGTACGTCATAAATGTCTCTCAGGAATTGGAAAATTGATGTACTTCAGCACTCCAGAGATGATACAGTCATTATTGAATGTGACTAATATAGCAAGTTTTCTAGCTGGTGTTTTGGCATGGAAAGATCCACACATTTTGATTCCTGCTCTCCAGATTGCTGAGATTCTTATGGAAAAGCTTCATGAAACATTTTCTAAGATGTTCCTTCGAGAAGGCGTTGTTTATGCTGTTGACCAGCTTATCTTGGCTAATAGCCAAAATACTTCTTCCCAAGCACCTTCTATTGAGAAGGATAAAAACTCTGCATCTGGAACTTCATCACACACTCGACGTTACAGGCGGCGCAGTGGAAATATGAATTCGGATGGAAGTTCACTGGACGAAAACAAGAATTCTGTTTCTGGAAGTGGTGTTCCACAGGGTTCAGTGGAGGTTCCATCAATAAATTCTAATCTCCGAACTTCTGTAAGTTCCTACGCCAATGCTTTTAAGACTAAGTACTTCCCTTTAGATCCAGGAGATGTTGAAGTTGGAGTTACAGATGATCTCTTACGTTTGAAGAATCTTTGTGTCAAGTTGAGTGCTGGTATTGATGATCAGAAGAGTAAATCAAAAGGAAAGTTGAAAGTGTCAGGGTCTCGCCTAGATGATATTATTACAAATAAGGAAGAGTATTTAACTGGCGTGATATCTGAAATGCTAGTTGAATTGGGCAAAGATGATGGTGTTTCCACTTTTGAATTTATTGGTAGTGGTGTTGTTGGAGTTCTGCTTAACTACTTTTCTTGCGGATACTTCTCTAAAGGAAGAATTTCGGAAGGCGAGTTGCCAAAGCTTCGGCAACAAGTGCTTAAAAGGTTTAAATCATTTATTTCTGTTGCCCTTCCTACAAGCATTAATGAGGGGACAGTAGCTCCTATGACAGTCTTAGTTCAAAAGCTGCAGAGTGCTTTATCCTCGTTGGAGCGTTTTCCAGTTGTCTTGAGCCATTCTTCTAGATCATCCAGTGGTAGTGCGCGGCTTTCCTCTGGGCTAAGTGTATTATCTCAGCCATTTAAGTTACGACTTTGTCGAGCCCAGGGAGAAAAATCACTTCGTGATTATTCATCAAATATTGTTCTGATTGATCCATTGGCTAGTTTAGCAGCTGTCGAAGAATTTCTGTGGCCTCGAGTTCAGAAAAGTGAATCTGGTCAGAAACCTTCAGCATCTGGTGCAAACTCAGATTCAGGAACTACGCCTCCAGGAAATGTTGCTCCATCAGGGTTAAATTCAACCCCCAGTTCAACCACTCGTCGTTACTCTACTAGGTCTAGATCATCGATGACTATTGGAGAAAGAGCAGGGAAGGAAACTTCACAGGAGAAAAGCACATCAAAGGGGAAGGGGAAAGCTATTCTAAAGCCTGCCTGGGAGGAGAAGAGAGGCTTGCAAACTAGAAGTTCGACTCGTAGAAGAGCAGCTGTGGACAAGAATGCCCAAATGAAACCAGTAAATGGAGAGACTACATCTGAGGATGAAGAATTGGACCTATCCTCCATCCAGATTGATGATTCTTTAGTGATTGAGGATGATGATATTTCTGATGATGAAGATGATGACCATGATGATGTGCTGCAGGATGACTCTCTTCCTCTTTGTATGCCTGAAAAGGTGCATGATGTCAAATTGGGAGACACAGTTGAAGATGGGGATGCTGGTCCAGCTACAAGTGATGGCCAGATTCATTCTACTTTTGGCTCTAGCAGTAGAGCTGCTACAGTCAGGGGTTCTAATTCTCCTGATCATAGGAGTGCCAATTCTTTTAGTTTGAGGGGAGGTATGTCATTTGCTGCTGCCGCTATGGCTGGGCTTGGACCAGCTAATGGCAGGGGTTTCCGTGGAGGTCGGGATCCACAGGGACGTCCTCTTTTCAGTGGCTCCAATGATAACCCAAAATTACTTTTTTCTTCTGGTGAGAAGCAGCTTGATAGGCATTTGACAATATATCAAGCTGTTCAACGCCAGCTTGTTTTGAATGAAGACGATGATGAGAGGTTTGCCGGTGCTGGCACTGATTTCTTATCTAATGATGGGAGCAGTTTATGGGGCGATATATATACTATCACGTATCAGAGGGCAGATAATCAATCTGAAAGAGCTGCTTTGGCTGGGGAATCAAGCTCCTCAAAATCTAAATCTACCAAATGTGTATCAACATCCAATTCAAATTCAGAGTCTCAATACCATCAAATGTCACTTTTAGATAGTATTTTACAAGGAAAACTTCCATGTGATTTTGACAAATCTAATCCTACATATGATATACTATCTTTATTGCGTGTACTTGAGGGATTGAATCAGCTTGCTCCACGCTTAAGGGCACAGATTGTGTCGGATCATTTTGCAGAGGGAAAGATCACCACACTTGATGAACTGGGTGGAATTGGTGGAAAGGTTCCACATGAGGAATTTATCAACAGTAAGCTTACTCCCAAATTGGCCCGACAAATTCAGGATGCTCTTGCACTATGCAGTGGGAGTCTTCCCTCGTGGTGTTACCAATTGACTAAGGCATGCCCATTCTTATTTCCTTTTGAGACCCGCCGACAATATTTCTATTCAACTGCATTTGGGCTGTCACGTGCATTATATCGGCTACATCAGCAGCAAGGAGCTGATGGTCTTGGAACAGTAAATGAACGAGAGGGAAGGGTTGGAAGATTGCAGCGCCAGAAGGTTCGTGTCTCCCGTAATCGTATATTGGATTCTGCTGCGAAAGTTATGGAGATGTATTCTAGCCAGAAGGCTGTTCTTGAAGTAGAATATTTTGGTGAAGTGGGAACTGGATTAGGTCCTACCCTTGAGTTCTACACACTTTTAAGTCATGAATTGCAGAGGGCTGGACTTGGAATGTGGAGGTCTAATTCATTGCGAGAGGCAACAGATAGTGGTGAAGATGGACAACTTAGGAAGGCTAAAGGTGGCTATAGGCTTACTTCTGATGTGGCCAATATTGATATCATCCAATCTCCTCTTGGGTTGTTTCCTCGACCTTGGCCGCCAAATGCTGATTCTTCTGATGGCAGCCAATTTTCGAAGGTTATTGAATATTTCCGGCTTGTTGGTCGTGTGATGGCCAAAGCTCTACAAGATGGAAGACTATTGGATCTACCGCTCTCAACAGCATTTTATAAGCTTGTTCTTGGTCAAGATCTTGATTTACATGATATCCTCTCATTTGACCCTGAGCTTGGGAAGACTTTACAAGAATTGCAGGCTCTTGTTTGCCGGAAACAATATTTAGGATCGATAAATGGTGATAATCAAAATACAATTTCCAACTTGTCTTTCCGTGGGATTCCAGTTGAAGATCTCTGCTTGGATTTTACAGTTCCTGGTTATCCAGACTACGTTTTGAGGCCAGGAGATGAAACTGTTAATATTCATAACTTGGAGGAGTACATATCCTTAGTATTAGATGCGACTGTCAAGACTGGAATAATGCGGCAAATGGAAGCATTTACTGCAGGATTCAATCAGGTATTTGACATCACAGCATTACGCATATTCATTCCTCATGAGTTGGACCATTTACTATGTGGCCGTAGAGAATTGTGGAAGGCCGACACACTTGTCGATCATATTAAATTTGATCATGGATACACAGCCAAGAGTCCTGCAATAGTCAATTTTCTTGAGATTATGGGCGAATTCACACCAGAACAGCAGCGAGCATTCTGCCAGTTTGTTACAGGTGCACCTAGGCTTCCACCAGGTGGCCTTGCAGTGTTAAACCCAAGATTGACTATTGTGAGAAAGCACTCATCAACTGCAACTAACGTAGCAAACAGCGCTACGGGGGCTTCTGAATCAGCAGATGATGATTTGCCTAGTGTCATGACATGCGCCAATTACCTTAAGCTTCCTCCGTACTCGACCAAGGTGCCTTTTGGCGGCCGCCGTCAGAGAGCAGCAGTTCCTTCCTTCTACTTTTGGTTCTTTTTCTTTTTTCTTTTGGAGTTTGTACATTCATATTTTAACCATTCTGTTCATCATGTGCTCCTGTTTATTTGCTCTCTGTTTGTTAGAGCAATGGGTATTCACAGTATGGTTAATATTTGGTCGGAACTATTGGCCACATTTTCAGGAAAACGTAGAGGGAATTTTCGAAACGAACAAGAAGCGCAAGCCATGGCTAACGAAGAAGACGATCTCGACCTTCTCCTTTCTCTTCAAGATAAAGTTGATGAAACTCCTCCTGGAACTCCGCCTCATTCCTCAGATCTTCTATCTGACGATGAATCACCAAGACGAGCAGGTCCTGTGGATATGTCTATCTTCAGAAACGCTGTCAAAGACTGCCTTGATTATGACCACATACCAACTGAAAAGACTGGAAAAACGAACCGGTCTAAGGCCTCTAATGATGTTTCAATCGAGAAGTTTTCTGGTTTGCGAATGAGGAATCAACTGGTGGCACCTGCTGAGCTTCGCGATCGTTTTTCTGACATTCGCTTTGTTCGATTGTCTACCATAAAGAATCTGTTGGTTGGGGACACCCTTTCAGGCTGTTGGGTAACTGTCGGAGTGTTGACTGAGAAAGGAAGTCCAAAAACAAGCTCTACAGGGAAAGCTTATTGCATCTGGAAACTTAGTTGTTTAGATGAAAACACTGTTTCTGTTTTCTTATTTGGTGACGCTTATAAAAGAAATTGCAAGGAGCTGGCTGGAACAGTTTTTGCGCTTTTTAACTCTACTGTACGAAAGGATGCAACGGGCATGGGGTTTTCTTTAAGTGTGTATCAACCAAGCCAATTGTTAAAGATGGGCACTTCAGATGACTATGGAGTATGCAAGGGGAAGAAGAAGGATGGGATTGCTTGTACAACCGTAATAAATAGGCGACGTGGCATATACTGTAAATATCATAAATCAAAGGCATCAGAAAAATATTCCACAACCGCACGAACTGAGCTCAAAGGAGGGAATCTGAGGACTGCATTCAGAGATTATCATCACAAGCCAGAAGGAGTTTACATGGTAGATCCGCTAGCTGGTAAAGTGACTTCTAAGAAGCCAGCACAGCCGGTAAAACTGTTGTCTGTGGAAGGCCTGAAAAGGGCATTGAGCAATGCAGACAAAGTGACCACCAATTCACACTCACAAGGGAAAAGATTCCTTGCTGAGATCACAGGGAAACTTACTAGTAAAAGTGTAAATAAAGAATTAGCCAAACAAAGTCAGCAGAGAATCAGTTCAGAGAAGACGTCAATGTTGAAGTCATCCACCATGAAACTGGATTCAAGAGTTGAAAACCAACAACCAGATCCAAAAAGAAAGAAAACCGACCATACTCCGGTAGACAAAACCACAAAAGAAACAGGAAAGATGATAGAGTTAGATTATGTTAGTTCAGATGATGATATCGACCTTATATTCACCCGATAA 7119 43.57 METRSRKRAEASSAAPSSSSSGPTTRSTKRARLSGTSPSNLAASTLSITTRSRSTRTQEPSATSTPMDSTNESSGSRRRGKNSDKENSDKGKEKEHEVRIGDRERNAEQSFGLNIEGSGGGEDDDNDDSEGGMGVLQQNLSTASSALQGLLRKLGAGLDDLLPSSAIASASSSQQRGRLKKILSGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSTGGGQSTLGSATYTGLIRLLSTCASGSALGAKTLLLLGISGILKDILSGSGVSTNASVSPALNRPQEQIFEIVNLANELLPPLPQGTISFPPNFNLFVKGPVIKKPSTSGSVKEEDPTDSAPEVSAREKLLKDQPELLLQFGMDLLPILIQIYGSSVNGPVRHKCLSGIGKLMYFSTPEMIQSLLNVTNIASFLAGVLAWKDPHILIPALQIAEILMEKLHETFSKMFLREGVVYAVDQLILANSQNTSSQAPSIEKDKNSASGTSSHTRRYRRRSGNMNSDGSSLDENKNSVSGSGVPQGSVEVPSINSNLRTSVSSYANAFKTKYFPLDPGDVEVGVTDDLLRLKNLCVKLSAGIDDQKSKSKGKLKVSGSRLDDIITNKEEYLTGVISEMLVELGKDDGVSTFEFIGSGVVGVLLNYFSCGYFSKGRISEGELPKLRQQVLKRFKSFISVALPTSINEGTVAPMTVLVQKLQSALSSLERFPVVLSHSSRSSSGSARLSSGLSVLSQPFKLRLCRAQGEKSLRDYSSNIVLIDPLASLAAVEEFLWPRVQKSESGQKPSASGANSDSGTTPPGNVAPSGLNSTPSSTTRRYSTRSRSSMTIGERAGKETSQEKSTSKGKGKAILKPAWEEKRGLQTRSSTRRRAAVDKNAQMKPVNGETTSEDEELDLSSIQIDDSLVIEDDDISDDEDDDHDDVLQDDSLPLCMPEKVHDVKLGDTVEDGDAGPATSDGQIHSTFGSSSRAATVRGSNSPDHRSANSFSLRGGMSFAAAAMAGLGPANGRGFRGGRDPQGRPLFSGSNDNPKLLFSSGEKQLDRHLTIYQAVQRQLVLNEDDDERFAGAGTDFLSNDGSSLWGDIYTITYQRADNQSERAALAGESSSSKSKSTKCVSTSNSNSESQYHQMSLLDSILQGKLPCDFDKSNPTYDILSLLRVLEGLNQLAPRLRAQIVSDHFAEGKITTLDELGGIGGKVPHEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLHQQQGADGLGTVNEREGRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHELQRAGLGMWRSNSLREATDSGEDGQLRKAKGGYRLTSDVANIDIIQSPLGLFPRPWPPNADSSDGSQFSKVIEYFRLVGRVMAKALQDGRLLDLPLSTAFYKLVLGQDLDLHDILSFDPELGKTLQELQALVCRKQYLGSINGDNQNTISNLSFRGIPVEDLCLDFTVPGYPDYVLRPGDETVNIHNLEEYISLVLDATVKTGIMRQMEAFTAGFNQVFDITALRIFIPHELDHLLCGRRELWKADTLVDHIKFDHGYTAKSPAIVNFLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPRLTIVRKHSSTATNVANSATGASESADDDLPSVMTCANYLKLPPYSTKVPFGGRRQRAAVPSFYFWFFFFFLLEFVHSYFNHSVHHVLLFICSLFVRAMGIHSMVNIWSELLATFSGKRRGNFRNEQEAQAMANEEDDLDLLLSLQDKVDETPPGTPPHSSDLLSDDESPRRAGPVDMSIFRNAVKDCLDYDHIPTEKTGKTNRSKASNDVSIEKFSGLRMRNQLVAPAELRDRFSDIRFVRLSTIKNLLVGDTLSGCWVTVGVLTEKGSPKTSSTGKAYCIWKLSCLDENTVSVFLFGDAYKRNCKELAGTVFALFNSTVRKDATGMGFSLSVYQPSQLLKMGTSDDYGVCKGKKKDGIACTTVINRRRGIYCKYHKSKASEKYSTTARTELKGGNLRTAFRDYHHKPEGVYMVDPLAGKVTSKKPAQPVKLLSVEGLKRALSNADKVTTNSHSQGKRFLAEITGKLTSKSVNKELAKQSQQRISSEKTSMLKSSTMKLDSRVENQQPDPKRKKTDHTPVDKTTKETGKMIELDYVSSDDDIDLIFTR 2372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24602835 24623376 + CcPI632755_02g012920.1 Cco02g1292 172049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1292 2372 SUPERFAMILY Hect, E3 ligase catalytic domain 1460 1871 IPR035983 GO:0004842(InterPro)
Cco02g1292 2372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 136 1871 IPR045322 GO:0000209(PANTHER)|GO:0006511(InterPro)|GO:0043161(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)
Cco02g1292 2372 Pfam Primase zinc finger 2167 2209 IPR015408 GO:0005634(InterPro)|GO:0006260(InterPro)
Cco02g1292 2372 SMART arm_5 210 251 IPR000225 GO:0005515(InterPro)
Cco02g1292 2372 SMART arm_5 336 374 IPR000225 GO:0005515(InterPro)
Cco02g1292 2372 SMART arm_5 293 333 IPR000225 GO:0005515(InterPro)
Cco02g1292 2372 MobiDBLite consensus disorder prediction 512 529 - -
Cco02g1292 2372 MobiDBLite consensus disorder prediction 1134 1164 - -
Cco02g1292 2372 Gene3D Hect, E3 ligase catalytic domains 1408 1654 - -
Cco02g1292 2372 Pfam HECT-domain (ubiquitin-transferase) 1584 1871 IPR000569 GO:0004842(InterPro)
Cco02g1292 2372 MobiDBLite consensus disorder prediction 958 1071 - -
Cco02g1292 2372 SUPERFAMILY ARM repeat 178 646 IPR016024 -
Cco02g1292 2372 MobiDBLite consensus disorder prediction 1012 1054 - -
Cco02g1292 2372 Pfam MCM10 OB-fold 2038 2164 IPR055065 -
Cco02g1292 2372 MobiDBLite consensus disorder prediction 958 1011 - -
Cco02g1292 2372 MobiDBLite consensus disorder prediction 74 106 - -
Cco02g1292 2372 Gene3D Hect, E3 ligase catalytic domain 1763 1875 - -
Cco02g1292 2372 MobiDBLite consensus disorder prediction 1121 1164 - -
Cco02g1292 2372 MobiDBLite consensus disorder prediction 2301 2350 - -
Cco02g1292 2372 FunFam HECT ubiquitin protein ligase family protein KAK 172 486 - -
Cco02g1292 2372 FunFam DNA replication licensing factor mcm10 2028 2202 - -
Cco02g1292 2372 MobiDBLite consensus disorder prediction 10 73 - -
Cco02g1292 2372 FunFam E3 ubiquitin-protein ligase UPL3 1409 1653 - -
Cco02g1292 2372 MobiDBLite consensus disorder prediction 509 529 - -
Cco02g1292 2372 MobiDBLite consensus disorder prediction 1 135 - -
Cco02g1292 2372 MobiDBLite consensus disorder prediction 681 709 - -
Cco02g1292 2372 MobiDBLite consensus disorder prediction 651 709 - -
Cco02g1292 2372 MobiDBLite consensus disorder prediction 1276 1300 - -
Cco02g1292 2372 MobiDBLite consensus disorder prediction 1185 1207 - -
Cco02g1292 2372 MobiDBLite consensus disorder prediction 651 670 - -
Cco02g1292 2372 MobiDBLite consensus disorder prediction 1973 1995 - -
Cco02g1292 2372 CDD HECTc 1468 1871 IPR000569 GO:0004842(InterPro)
Cco02g1292 2372 MobiDBLite consensus disorder prediction 2301 2327 - -
Cco02g1292 2372 SMART hect_3 1479 1889 IPR000569 GO:0004842(InterPro)
Cco02g1292 2372 MobiDBLite consensus disorder prediction 2328 2350 - -
Cco02g1292 2372 Gene3D - 2027 2201 IPR012340 -
Cco02g1292 2372 ProSiteProfiles HECT domain profile. 1492 1891 IPR000569 GO:0004842(InterPro)
Cco02g1292 2372 Gene3D - 180 661 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1292 K10590 - - csv:101218793 3318.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1292 Cco-Chr2:24602835 Cco10g2050 Cco-Chr10:33872104 2.70E-257 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g154 . . . . . Bpe12g00120 . . . . Cma02g00257 Cma20g00754 . Car20g00655 . . . . . . . . . . . . . . . . . . . . Cone10ag1234 . . Chy11g00258 . Blo04g00566 Blo13g00505 Bda15g01035 . Bpe15g00815 . Bma03g00607 Bma08g00752 Sed01g0197 Cmo02g00253 Cmo20g00750 . . . . Cpe16g00315 Cpe05g01375 Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . Cla02g01165 Cam02g1242 Cec02g1251 Cco02g1292 Clacu02g1224 Cmu02g1192 Cre02g1504 . Csa02g01389 . Cme11g00383
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g0051 . 106 692 Core DNA Replication Machinery Family AT4G14700 65.4 1.5e-220 763.1
Cco08g0051 . 20 692 Core DNA Replication Machinery Family AT4G12620 61.6 4.0e-229 791.6
Cco08g1757 . 65 436 Core DNA Replication Machinery Family AT2G37560 57.3 2.2e-123 439.1
Cco07g0493 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.8 3.5e-152 535.0
Cco06g0369 . 3 534 Core DNA Replication Machinery Family AT4G29910 56.9 3.3e-169 592.0
Cco11g0902 . 1 254 Core DNA Replication Machinery Family AT1G26840 68.5 3.6e-92 335.1
Cco09g2466 . 68 864 Core DNA Replication Machinery Family AT1G79150 58.7 1.4e-248 856.3
Cco10g1289 . 8 939 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1348.6
Cco04g2230 . 102 676 Core DNA Replication Machinery Family AT5G46280 80.9 1.8e-268 921.8
Cco02g0511 . 1 845 Core DNA Replication Machinery Family AT2G16440 75.9 0.0e+00 1146.3
Cco11g0380 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.1
Cco04g2395 . 7 818 Core DNA Replication Machinery Family AT5G44635 71.9 0.0e+00 1153.7
Cco09g0502 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cco02g2101 . 55 521 Core DNA Replication Machinery Family AT2G29680 62.1 3.1e-163 572.0
Cco02g2101 . 37 482 Core DNA Replication Machinery Family AT1G07270 59.2 7.5e-143 504.2
Cco09g0862 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 1.2e-257 885.9
Cco10g2049 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.5 0.0e+00 1078.2
Cco09g1753 . 44 464 Core DNA Replication Machinery Family AT2G14050 82.4 4.2e-197 684.9
Cco09g1752 . 9 237 Core DNA Replication Machinery Family AT2G14050 69.0 7.9e-87 318.5
Cco02g1292 . 1955 2365 Core DNA Replication Machinery Family AT2G20980 56.1 7.0e-118 421.0
Cco09g0260 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 2.3e-72 268.9
Cco11g0627 . 1 184 Core DNA Replication Machinery Family AT1G19080 69.0 3.9e-71 264.6
Cco11g0627 . 1 184 Core DNA Replication Machinery Family AT3G55490 69.0 3.9e-71 264.6
Cco05g0179 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 8.8e-50 193.7
Cco02g1335 . 1 1521 Core DNA Replication Machinery Family AT5G67100 59.0 0.0e+00 1711.8
Cco06g0207 . 1 446 Core DNA Replication Machinery Family AT1G67320 63.6 4.2e-181 631.3
Cco08g0215 . 144 587 Core DNA Replication Machinery Family AT5G41880 65.0 2.9e-176 615.1
Cco04g1267 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.6 0.0e+00 1794.6
Cco10g1734 . 1 441 Core DNA Replication Machinery Family AT2G42120 72.1 1.6e-192 669.1
Cco06g0207 . 1 446 Core DNA Replication Machinery Family AT1G67320 63.6 4.2e-181 631.3
Cco01g0571 . 1 127 Core DNA Replication Machinery Family AT1G09815 60.0 3.2e-37 151.4
Cco02g2358 . 1 1866 Core DNA Replication Machinery Family AT1G08260 74.8 0.0e+00 2799.6
Cco09g2253 . 1 1999 Core DNA Replication Machinery Family AT1G08260 69.1 0.0e+00 2770.3
Cco09g2253 . 1 2090 Core DNA Replication Machinery Family AT2G27120 66.0 0.0e+00 2739.1
Cco02g2358 . 25 1861 Core DNA Replication Machinery Family AT2G27120 71.9 0.0e+00 2632.4
Cco01g1863 . 7 496 Core DNA Replication Machinery Family AT5G22110 63.0 4.9e-169 591.3
Cco02g2410 . 108 1032 Core DNA Replication Machinery Family AT5G22010 63.3 2.4e-307 1051.6
Cco10g0353 . 3 332 Core DNA Replication Machinery Family AT1G63160 91.5 2.2e-173 605.1
Cco04g0633 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.1e-178 622.9
Cco11g1646 . 1 334 Core DNA Replication Machinery Family AT1G21690 82.1 3.3e-153 538.1
Cco08g0722 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.3 4.6e-156 547.7
Cco11g0176 . 26 607 Core DNA Replication Machinery Family AT2G06510 68.0 4.0e-245 844.3
Cco10g0112 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.1 2.4e-194 675.6
Cco06g1757 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.3 2.9e-248 854.7
Cco10g0112 . 10 812 Core DNA Replication Machinery Family AT5G45400 50.5 2.8e-225 778.9
Cco06g1757 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 3.0e-240 828.2
Cco10g0112 . 5 798 Core DNA Replication Machinery Family AT4G19130 53.5 1.1e-223 773.5
Cco03g1856 . 1 404 Core DNA Replication Machinery Family AT5G26680 82.7 2.7e-189 658.3
Cco05g0323 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.4 6.2e-299 1023.8
Cco07g1648 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 2.3e-115 412.1
Cco02g2308 . 2 762 Core DNA Replication Machinery Family AT1G08130 68.8 4.8e-296 1013.8
Cco02g2308 . 162 762 Core DNA Replication Machinery Family AT1G49250 68.6 1.1e-240 829.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48