Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1296 ATGGAAGACGGGGAGCTTGAATCTTCGAACCCTGAAGTGTTTTCGAGTTCGAATGCTGTTGAGCTTCCGAGCAGTTGCTCAATGGATAGCTTCTTTGATGAAATTCTGAAGGACACTCATGCTTGCACACATGCTCATACTTGCAACCCTCCTGGTCCTGATTTTTCACATACACACACCTGTTTTCATGTCCATACGAAAATTGTCTCTTCCCCCACTGAAGAAAAGGTTTCCACTGATGACACAGCGGAGTCTGTGGATAAAAAGAACAAGAAGCGGCCGCTTGGTAATCGTGAAGCAGTTCGTAAATACCGGGAGAAGAAAAAGGCGAGGGCTGCATCATTGGAAGATGAAGTTGTGAGATTGAGGGCCCTGAATCAGCAACTGTTGAAGAGATTGCAAGGTCAGGCTGCATTGGAGGCTGAGATTTCCAGGCTCAAATGTTTGCTTGTGGATATTCGGGGAAGAATTGAAGGGGAGATTGGAACGTTTCCATATCGGAAACCAGCCAATTCAGATCTGCCCAATCAAAATGTGCCGGGTAGTTACATGGTAAATCCATGTAATGTGCAATGCAATGATCAAGCATATTGCCTTCACCCAGGGGACGATGGAAAAAGTGGAGAGAGTGTTTCGTTGAATGGGCAAAGTTTTAGTGCGTGTGATTTTGAAAATCTTCAGTGCTTGGCAAATCAAAACACAGGAGTAAAGGAACTTCCTGACTGTGGACTAGGAAACACAATTTCTAACGTTAATTGCTCAGAATTAAATCCGAAGAAAGGAGGAGGGGTCTGTTTTCTCTTCCGCAAACCATTCACCCGCTTTCTAGGTTGTTTGGGATGGTCATTTATGTTGAATGAGAAGAACTAG 870 44.37 MEDGELESSNPEVFSSSNAVELPSSCSMDSFFDEILKDTHACTHAHTCNPPGPDFSHTHTCFHVHTKIVSSPTEEKVSTDDTAESVDKKNKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQQLLKRLQGQAALEAEISRLKCLLVDIRGRIEGEIGTFPYRKPANSDLPNQNVPGSYMVNPCNVQCNDQAYCLHPGDDGKSGESVSLNGQSFSACDFENLQCLANQNTGVKELPDCGLGNTISNVNCSELNPKKGGGVCFLFRKPFTRFLGCLGWSFMLNEKN 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24656784 24658987 + CcPI632755_02g012960.1 Cco02g1296 172053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1296 289 FunFam Basic leucine zipper 24 75 153 - -
Cco02g1296 289 SMART brlzneu 84 152 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1296 289 MobiDBLite consensus disorder prediction 77 97 - -
Cco02g1296 289 Gene3D - 75 153 - -
Cco02g1296 289 Coils Coil 98 132 - -
Cco02g1296 289 CDD bZIP 91 144 - -
Cco02g1296 289 Pfam Basic region leucine zipper 87 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1296 289 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1296 289 MobiDBLite consensus disorder prediction 72 97 - -
Cco02g1296 289 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1296 289 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 184 IPR031106 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0453 Cco-Chr2:4095136 Cco02g1296 Cco-Chr2:24656784 4.30E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58768 PF07716 bZIP_2 5.40E-15 CL0018 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1296 K25785 - csv:101219501 511.531