Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g1296 | ATGGAAGACGGGGAGCTTGAATCTTCGAACCCTGAAGTGTTTTCGAGTTCGAATGCTGTTGAGCTTCCGAGCAGTTGCTCAATGGATAGCTTCTTTGATGAAATTCTGAAGGACACTCATGCTTGCACACATGCTCATACTTGCAACCCTCCTGGTCCTGATTTTTCACATACACACACCTGTTTTCATGTCCATACGAAAATTGTCTCTTCCCCCACTGAAGAAAAGGTTTCCACTGATGACACAGCGGAGTCTGTGGATAAAAAGAACAAGAAGCGGCCGCTTGGTAATCGTGAAGCAGTTCGTAAATACCGGGAGAAGAAAAAGGCGAGGGCTGCATCATTGGAAGATGAAGTTGTGAGATTGAGGGCCCTGAATCAGCAACTGTTGAAGAGATTGCAAGGTCAGGCTGCATTGGAGGCTGAGATTTCCAGGCTCAAATGTTTGCTTGTGGATATTCGGGGAAGAATTGAAGGGGAGATTGGAACGTTTCCATATCGGAAACCAGCCAATTCAGATCTGCCCAATCAAAATGTGCCGGGTAGTTACATGGTAAATCCATGTAATGTGCAATGCAATGATCAAGCATATTGCCTTCACCCAGGGGACGATGGAAAAAGTGGAGAGAGTGTTTCGTTGAATGGGCAAAGTTTTAGTGCGTGTGATTTTGAAAATCTTCAGTGCTTGGCAAATCAAAACACAGGAGTAAAGGAACTTCCTGACTGTGGACTAGGAAACACAATTTCTAACGTTAATTGCTCAGAATTAAATCCGAAGAAAGGAGGAGGGGTCTGTTTTCTCTTCCGCAAACCATTCACCCGCTTTCTAGGTTGTTTGGGATGGTCATTTATGTTGAATGAGAAGAACTAG | 870 | 44.37 | MEDGELESSNPEVFSSSNAVELPSSCSMDSFFDEILKDTHACTHAHTCNPPGPDFSHTHTCFHVHTKIVSSPTEEKVSTDDTAESVDKKNKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQQLLKRLQGQAALEAEISRLKCLLVDIRGRIEGEIGTFPYRKPANSDLPNQNVPGSYMVNPCNVQCNDQAYCLHPGDDGKSGESVSLNGQSFSACDFENLQCLANQNTGVKELPDCGLGNTISNVNCSELNPKKGGGVCFLFRKPFTRFLGCLGWSFMLNEKN | 289 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 24656784 | 24658987 | + | CcPI632755_02g012960.1 | Cco02g1296 | 172053 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g1296 | 289 | FunFam | Basic leucine zipper 24 | 75 | 153 | - | - | |
Cco02g1296 | 289 | SMART | brlzneu | 84 | 152 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1296 | 289 | MobiDBLite | consensus disorder prediction | 77 | 97 | - | - | |
Cco02g1296 | 289 | Gene3D | - | 75 | 153 | - | - | |
Cco02g1296 | 289 | Coils | Coil | 98 | 132 | - | - | |
Cco02g1296 | 289 | CDD | bZIP | 91 | 144 | - | - | |
Cco02g1296 | 289 | Pfam | Basic region leucine zipper | 87 | 134 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1296 | 289 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 87 | 134 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1296 | 289 | MobiDBLite | consensus disorder prediction | 72 | 97 | - | - | |
Cco02g1296 | 289 | SUPERFAMILY | Leucine zipper domain | 89 | 135 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1296 | 289 | PANTHER | CCAAT/ENHANCER BINDING PROTEIN | 1 | 184 | IPR031106 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0453 | Cco-Chr2:4095136 | Cco02g1296 | Cco-Chr2:24656784 | 4.30E-81 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58768 | PF07716 | bZIP_2 | 5.40E-15 | CL0018 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g1296 | K25785 | - | csv:101219501 | 511.531 |