Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g1301 | ATGTCTGGTTCAAAGGAAGGAGTGATTATTGGAGAAAGAGAGCATAATGATGAGGAGCAGAGGAAGGACTATGTGGATCCGCCAGCAGCTCCATTGATGGGGTTCTCAGAGTTGAAGAAATGGTCGTTTTACAGAGCTGTAATTGCAGAGTTTATGGCAACATTACTTTTCCTTTATATCACCATAGCCACTGCCATTGGAAACAACAATGCACAAACAACAGGGCCCTGTTATGGCGTTGGGGTTCTGGGCATAGCATGGGCCTTCGGCGCCGTCATCTTCGTCCTTGTTTACTGCACCGCCGGTATTTCAGGCGGCCATATCAACCCCGCCATCACGTTCGGGATGCTGTTGGCCAGAAAGGTGTCGCTGATTCGCGCGGTGGCTTACATAGCGGCGCAGTCTCTGGGAGCCATTGCCGGCGTTGCATTGGTTAAAGCTCTCATGAGGCACGCTTACAACAGCAACGGCGGCGGAGCCAATGTCGTCGCCGCCGGGTTCAGCAAAGGCGCCGCCCTTGGCGCCGAGATCATCGGCACTTTTCTGCTGGTGTACACTGTATTCTCCGCCACTGACCCAAAAAGAAACGCCCGAGACTCCCATGTTCCTGTTTTGGCTCCGTTGCCTATCGGACTTGCGGTCTTTGTAGTGCATCTAGCTACGATTCCGATCACCGGCACCGGCATCAACCCTGCTCGGAGCTTGGGCGCTGCCGTCATGTTCAACAACAGAAGAGTTTGGAGTCAACATTGGATATTTTGGGTTGGGCCATTTGTTGGGGCGTTGGCAGCGGCGGCGTACCATCAATACGTTCTCAGAGCGGCGGCTGTCAAAGCTCTTGGATCCTTTCGTAGTAACCGTTCCGGCTAG | 870 | 53.56 | MSGSKEGVIIGEREHNDEEQRKDYVDPPAAPLMGFSELKKWSFYRAVIAEFMATLLFLYITIATAIGNNNAQTTGPCYGVGVLGIAWAFGAVIFVLVYCTAGISGGHINPAITFGMLLARKVSLIRAVAYIAAQSLGAIAGVALVKALMRHAYNSNGGGANVVAAGFSKGAALGAEIIGTFLLVYTVFSATDPKRNARDSHVPVLAPLPIGLAVFVVHLATIPITGTGINPARSLGAAVMFNNRRVWSQHWIFWVGPFVGALAAAAYHQYVLRAAAVKALGSFRSNRSG | 289 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 24748590 | 24752094 | + | CcPI632755_02g013010.1 | Cco02g1301 | 172058 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g1301 | 289 | NCBIfam | MIP family channel protein | 49 | 267 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco02g1301 | 289 | SUPERFAMILY | Aquaporin-like | 37 | 273 | IPR023271 | - | |
Cco02g1301 | 289 | Gene3D | Glycerol uptake facilitator protein. | 30 | 289 | IPR023271 | - | |
Cco02g1301 | 289 | Pfam | Major intrinsic protein | 37 | 268 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco02g1301 | 289 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 14 | 285 | IPR034294 | GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER) | |
Cco02g1301 | 289 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cco02g1301 | 289 | PRINTS | Major intrinsic protein family signature | 89 | 113 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco02g1301 | 289 | PRINTS | Major intrinsic protein family signature | 251 | 271 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco02g1301 | 289 | PRINTS | Major intrinsic protein family signature | 45 | 64 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco02g1301 | 289 | PRINTS | Major intrinsic protein family signature | 126 | 145 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco02g1301 | 289 | PRINTS | Major intrinsic protein family signature | 175 | 193 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco02g1301 | 289 | PRINTS | Major intrinsic protein family signature | 211 | 233 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco02g1301 | 289 | CDD | MIP | 45 | 271 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco02g1301 | 289 | ProSitePatterns | MIP family signature. | 107 | 115 | IPR022357 | - | |
Cco02g1301 | 289 | MobiDBLite | consensus disorder prediction | 8 | 23 | - | - | |
Cco02g1301 | 289 | FunFam | Probable aquaporin PIP1-2 | 30 | 287 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1301 | Cco-Chr2:24748590 | Cco05g2361 | Cco-Chr5:32129236 | 1.70E-105 | dispersed | |
Cco02g0445 | Cco-Chr2:4016780 | Cco02g1301 | Cco-Chr2:24748590 | 3.40E-119 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g1301 | K09872 | - | gmx:100306103 | 437.958 |