Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1301 ATGTCTGGTTCAAAGGAAGGAGTGATTATTGGAGAAAGAGAGCATAATGATGAGGAGCAGAGGAAGGACTATGTGGATCCGCCAGCAGCTCCATTGATGGGGTTCTCAGAGTTGAAGAAATGGTCGTTTTACAGAGCTGTAATTGCAGAGTTTATGGCAACATTACTTTTCCTTTATATCACCATAGCCACTGCCATTGGAAACAACAATGCACAAACAACAGGGCCCTGTTATGGCGTTGGGGTTCTGGGCATAGCATGGGCCTTCGGCGCCGTCATCTTCGTCCTTGTTTACTGCACCGCCGGTATTTCAGGCGGCCATATCAACCCCGCCATCACGTTCGGGATGCTGTTGGCCAGAAAGGTGTCGCTGATTCGCGCGGTGGCTTACATAGCGGCGCAGTCTCTGGGAGCCATTGCCGGCGTTGCATTGGTTAAAGCTCTCATGAGGCACGCTTACAACAGCAACGGCGGCGGAGCCAATGTCGTCGCCGCCGGGTTCAGCAAAGGCGCCGCCCTTGGCGCCGAGATCATCGGCACTTTTCTGCTGGTGTACACTGTATTCTCCGCCACTGACCCAAAAAGAAACGCCCGAGACTCCCATGTTCCTGTTTTGGCTCCGTTGCCTATCGGACTTGCGGTCTTTGTAGTGCATCTAGCTACGATTCCGATCACCGGCACCGGCATCAACCCTGCTCGGAGCTTGGGCGCTGCCGTCATGTTCAACAACAGAAGAGTTTGGAGTCAACATTGGATATTTTGGGTTGGGCCATTTGTTGGGGCGTTGGCAGCGGCGGCGTACCATCAATACGTTCTCAGAGCGGCGGCTGTCAAAGCTCTTGGATCCTTTCGTAGTAACCGTTCCGGCTAG 870 53.56 MSGSKEGVIIGEREHNDEEQRKDYVDPPAAPLMGFSELKKWSFYRAVIAEFMATLLFLYITIATAIGNNNAQTTGPCYGVGVLGIAWAFGAVIFVLVYCTAGISGGHINPAITFGMLLARKVSLIRAVAYIAAQSLGAIAGVALVKALMRHAYNSNGGGANVVAAGFSKGAALGAEIIGTFLLVYTVFSATDPKRNARDSHVPVLAPLPIGLAVFVVHLATIPITGTGINPARSLGAAVMFNNRRVWSQHWIFWVGPFVGALAAAAYHQYVLRAAAVKALGSFRSNRSG 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24748590 24752094 + CcPI632755_02g013010.1 Cco02g1301 172058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1301 289 NCBIfam MIP family channel protein 49 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g1301 289 SUPERFAMILY Aquaporin-like 37 273 IPR023271 -
Cco02g1301 289 Gene3D Glycerol uptake facilitator protein. 30 289 IPR023271 -
Cco02g1301 289 Pfam Major intrinsic protein 37 268 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g1301 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 14 285 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Cco02g1301 289 MobiDBLite consensus disorder prediction 1 23 - -
Cco02g1301 289 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g1301 289 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g1301 289 PRINTS Major intrinsic protein family signature 45 64 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g1301 289 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g1301 289 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g1301 289 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g1301 289 CDD MIP 45 271 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g1301 289 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Cco02g1301 289 MobiDBLite consensus disorder prediction 8 23 - -
Cco02g1301 289 FunFam Probable aquaporin PIP1-2 30 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1301 Cco-Chr2:24748590 Cco05g2361 Cco-Chr5:32129236 1.70E-105 dispersed
Cco02g0445 Cco-Chr2:4016780 Cco02g1301 Cco-Chr2:24748590 3.40E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1301 K09872 - gmx:100306103 437.958