Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1302 ATGGCTGGTAAAGGGAATGGAGGTTTAGCTTGTACACATGCTTCTAATCCCTACCATGTTTGCTCTGAACACTGTTTTGAAAAGAAAGCTGAAAGCAAGAAGCAGATAGTTAGAAAGGATTCAGATCATGGTGCTCCGAAGCATAGTGGTGAACGCAAAAAGACAGTTTGTTCAGATTGCACTAGTGGATCTAATCCTTACCATGACTGTGATGAATTCTGCTCCAACATAACCACTCAATCTGGTAGGCCAAAAGCAGAAAGGGATTCAGGTTCAGGTGGAGCAAGGAAGGATTCCCTGCCAAAGTCGCCCCGAAAACTTAGCGTTCCTTTGGCAAGTGCTGTTTCATCTAAACCTCTACGTGTTCCCCCAGAGGAAAAAACTTCCTTCGTTGAAGACTCTTTGACAGTTGAGGAGCAAAATAAGTTCTCTAACTTGATTCTTGTTTCTGCAAATGCCTTGAAGGTTGAGGCTGATAATCTCCAAAAGCTCCGGAAAACTGACACTTCCTCAATTACTTCTGTGAAATCAAAAGAAGACATTAATACAAGGCATGAAATTTCTGAATTTGTACAAGAACCTTCAGTTCATGATGAGGAAGAAGGTGATCATAAAACTACTTTACCCAATATCACTAGCTTTCCTTTCCCCACAATGGCGCCTAATCATAAAGGAAGCGACGAGGAAGAGATTAAATCTGTATCATCTGAGCCCTCTGTACCTGTGGGGAAGTACTACGTTAAAGCAAGTTTAGCTCCCATTCTGCTATCAATCTTCAACAAGCATGGAGACATAGCGGCTTCATGTAAATTGGAATCGATTTCAATTCGTTCTTATTATCTGGAGTGTGTGTGCTATATCATTCATGAGTTGCAGTGCACAAAATTCTCTCAGAAGGTGTCCAAGTCCAAAGTTAGAGAACTCTTAGCCATCCTCAACGATGTAGTGTCTTCAGGAATGAATGTTGGTTGGTTGCATAGTATACTCAATGATATTGCAGAAATGGTTGAATCCAGCGGCCAAAAATGGACTCTGGAGGTGGCAAAGGCAAATTGCGACCATGAGTTGGAGCTGATCAAGAAAGAACTCGAATCTCAAATGCAGGATTTGACACGAAAAGAAAAGGAAGTGAACGATGCAAAGGCAAAAGTTGCCGATACCAGAACTCATTTGAGTGAACTTGAGTTCAAATATTTTCAGCTGAACAAGGAGATTTCATCTCTGCAGTTTAAGAACTCTCGTGCAATTCTTCTCCGTTCTTCCCTAAACGCGAAGAGAATCTGTTCCCTTCTTCTTCGTGTTCTAACCCACGCGGAAAACCTAGCGTTAGGCTTGAATTTCGGTTTTGCATCGCAAGATTTGACGGGAAGTAGTTGTGCTATTGGAGTAAGAGAAGTTGTTGCAGAGATGTCTGATGAAGGAAGAGTACACCCTGATTGTAGAAATGCTTCTAATCCTTATCATGAATGTAGCGAGTACTGCTTTAAAGTAATAGCTGAAGTCAAAGCCCGGAATCAGAAAAATGAGCCAGTTCCCACTTCATCAGAAGCTGTTCAAGCTGGTCGAAGTAGTGGTTCTTCCAATTTTGTGCCTCCTGATGAGTATGAAGATCTTCATGATGAAAAGCCTGACGAAGAAGGGCACAGTGATGGTGACGTTGACAAATTTAGTGGTGAGGAGAATGTGGAAGGAGACTTCACAAAGCTCACGGGGAGGAAAAAGAAATTGTTTGAAATTAGGCTTAAGATGAACGAGGCGCGAAAAGCTAATCAAACAGCAATCGCTGCTGAAAAGAAGAAAATGGAACCTCCATCAGAATCAAGGGGCATTTCTAAACAAAAGTGGCTTGAGGATCGGAAGAAGAAAATTGGGAAGCTTTTGGATGCAAATGGCTTGGATATGACAAAAGCATATATGTTAGATACACAAGAGGCTGCAGAGTCCAAATATAAGAAATGGGAGAAGGATCCAGCTCCCTATGGATGGGATGTCTTTAATCAGAAAACATTGTATAATGCATACAAAAAGAGGACGAAGAATGTAAATGTTGACCTTGAGGAATATAATAAAATGAAAGAATCTGATCCTGAGTTCTACCGCGAGGCTTCAAGTCTTCAGTATGGAAAGGCACCCAAGATTTCAGAGGATAAGATTGACAATATGGTGAAAGAACTCAAGGACCGGGACGAGAAGCGAAAGTCGTTTAGCCATACACTCTGGAGATCAAAAACAATCTTGAGCGAGGAACTGCATTACCTGATTAAGGATTTTCGGGGAAGTTTGGAATCCTATTCGAAAGCTACGGTTATTGGAGTTCCAAAGACTCGAAAGCTGTTCTCTTCTCTCAGGCCAGCAGCTGTAGCTCACAATTCCATCTCAAGGAAATACAACTAA 2394 41.65 MAGKGNGGLACTHASNPYHVCSEHCFEKKAESKKQIVRKDSDHGAPKHSGERKKTVCSDCTSGSNPYHDCDEFCSNITTQSGRPKAERDSGSGGARKDSLPKSPRKLSVPLASAVSSKPLRVPPEEKTSFVEDSLTVEEQNKFSNLILVSANALKVEADNLQKLRKTDTSSITSVKSKEDINTRHEISEFVQEPSVHDEEEGDHKTTLPNITSFPFPTMAPNHKGSDEEEIKSVSSEPSVPVGKYYVKASLAPILLSIFNKHGDIAASCKLESISIRSYYLECVCYIIHELQCTKFSQKVSKSKVRELLAILNDVVSSGMNVGWLHSILNDIAEMVESSGQKWTLEVAKANCDHELELIKKELESQMQDLTRKEKEVNDAKAKVADTRTHLSELEFKYFQLNKEISSLQFKNSRAILLRSSLNAKRICSLLLRVLTHAENLALGLNFGFASQDLTGSSCAIGVREVVAEMSDEGRVHPDCRNASNPYHECSEYCFKVIAEVKARNQKNEPVPTSSEAVQAGRSSGSSNFVPPDEYEDLHDEKPDEEGHSDGDVDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKANQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAESKYKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNVDLEEYNKMKESDPEFYREASSLQYGKAPKISEDKIDNMVKELKDRDEKRKSFSHTLWRSKTILSEELHYLIKDFRGSLESYSKATVIGVPKTRKLFSSLRPAAVAHNSISRKYN 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24752939 24761606 - CcPI632755_02g013020.1 Cco02g1302 172059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1302 797 MobiDBLite consensus disorder prediction 533 561 - -
Cco02g1302 797 MobiDBLite consensus disorder prediction 32 120 - -
Cco02g1302 797 MobiDBLite consensus disorder prediction 192 206 - -
Cco02g1302 797 Pfam Arabidopsis phospholipase-like protein (PEARLI 4) 196 412 IPR007942 -
Cco02g1302 797 MobiDBLite consensus disorder prediction 192 235 - -
Cco02g1302 797 MobiDBLite consensus disorder prediction 506 561 - -
Cco02g1302 797 Coils Coil 353 383 - -
Cco02g1302 797 MobiDBLite consensus disorder prediction 56 86 - -
Cco02g1302 797 MobiDBLite consensus disorder prediction 32 55 - -
Cco02g1302 797 MobiDBLite consensus disorder prediction 507 530 - -
Cco02g1302 797 MobiDBLite consensus disorder prediction 89 103 - -
Cco02g1302 797 PANTHER GCIP-INTERACTING PROTEIN P29 470 737 IPR013260 GO:0000974(PANTHER)|GO:0071013(PANTHER)|GO:0071014(PANTHER)
Cco02g1302 797 Pfam SYF2 splicing factor 630 737 IPR013260 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1302 K12868 - - csv:101220927 671.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0444 Cco-Chr2:4002945 Cco02g1302 Cco-Chr2:24752939 8.70E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g173 . . . . . . . . . . Cma02g00265 Cma20g00746 . Car20g00648 . . . . . . . . . . . . . . . . . . . . . Lsi10g00501 . Chy11g00249 . . . . . . . . . Sed01g0188 Cmo02g00261 Cmo20g00743 . . . . Cpe16g00321 Cpe05g01367 Bhi10g01837 Tan05g1122 Cmetu11g0186 . Hepe08g0301 . . Cla02g01175 Cam02g1254 . Cco02g1302 Clacu02g1236 Cmu02g1203 Cre02g1518 . Csa02g01399 . Cme11g00374
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005153 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 1 39