Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1303 ATGGAGGATTTGGTCGTTGTTTATCAGGAGTGGACTGGGTCCAATCCACTATTGATCCATTTCTTCTTGTTTCTAAGTTTTGTTGAAACTTCAATGTGTGAAGTCTTTCTTGTTGGAGATGAAGATGGCTGGAACTCTGGCATCAATTTTGTTAATTGGTCTCAAAACCACAATTTCACCAAAGGAGATTTTCTAGTTTTCAATTACTTAAATAATGAACACAATGTGTATGAAGTTATTGAGGAGACATACAGATCATGTGATGCAAGTAATGGAGTATTGGATGAATATGATAGTGGAAATGATAAAATTGAACTCAAAGAAGCAAGAAATTATTGGTTCATTTGTAATGTAGCTGGCCATTGCTTGGGTGGAATGAGGTTTGGAATTGAGGTTAAAGAAGCCAATTCTTCCATTCATATCCCACTTAATCCTCTTCAATCTCCTCCTCCAAAACCCAACCATGCTTCTAATTGTGGAAGGTATCCTATGTGGACCTCTTTCATTTGCATTCTAGCTTTTAAAATTCTATCTCATTAA 540 35.93 MEDLVVVYQEWTGSNPLLIHFFLFLSFVETSMCEVFLVGDEDGWNSGINFVNWSQNHNFTKGDFLVFNYLNNEHNVYEVIEETYRSCDASNGVLDEYDSGNDKIELKEARNYWFICNVAGHCLGGMRFGIEVKEANSSIHIPLNPLQSPPPKPNHASNCGRYPMWTSFICILAFKILSH 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24768592 24770757 - CcPI632755_02g013030.1 Cco02g1303 172060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1303 179 FunFam Blue copper binding protein-like 32 137 - -
Cco02g1303 179 SUPERFAMILY Cupredoxins 34 133 IPR008972 -
Cco02g1303 179 ProSiteProfiles Phytocyanin domain profile. 34 134 IPR003245 GO:0009055(InterPro)
Cco02g1303 179 CDD Phytocyanin 35 132 - -
Cco02g1303 179 Gene3D - 32 139 IPR008972 -
Cco02g1303 179 PANTHER BLUE COPPER PROTEIN 27 133 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Cco02g1303 179 Pfam Plastocyanin-like domain 44 126 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1303 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1303 Cco-Chr2:24768592 Cco10g1275 Cco-Chr10:25574885 6.30E-18 dispersed
Cco02g1303 Cco-Chr2:24768592 Cco07g0031 Cco-Chr7:311902 2.70E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g175 . . . . . . . . . . . Cma20g00745 . Car20g00647 . . . . . . . . . . . . . . . . . . Cone8ag1293 . . Lsi10g00502 . Chy11g00247 . . . . Bda14g00622 Bpe15g00805 . . . Sed01g0184 . Cmo20g00742 . . . . Cpe16g00322 . Bhi10g01832 Tan05g1117 Cmetu11g1432 . Hepe08g0303 . . Cla02g01176 Cam02g1255 Cec02g1264 Cco02g1303 Clacu02g1237 Cmu02g1204 Cre02g1519 . Csa02g01401 . Cme11g00372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013153 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27