Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1305 ATGGAGCAACAGGATTCTGTGGATAAGGAGTCTCTAATTGGTACTTGCAATAGAGATGGTGTGTCTTCGAGTGAAAATATCCACATCACAACTATAAATAATGATGAAACTAGAAGAAAAAATGAGAATACAAGCGACAAACCTAATATTCCACATATATACAGGCAAGATATTGTAAAAAGCAAAGGTAGTGGTATGATAGGGATTGTGACTGAAGTTGCTGGTGATGCTGATTCAGATAGTGATATTACTGATGATGAAGATGAAGATGATGACGGTGAGGATGGTGGGGATGATGATGGCTGTGATGATAATGATGGTGATGGAGAGAACGAAGGTCAAAACAAGGAAAATTTTGGTGATGACAGTAATGCTAAAAATACCAATGGAGATAATTATAAGAGCCAACCTCTTCCTGATGACGAAGTTCGAGTCCTTTGGATGGATGAAAGTGAGACAACTCAGAATGTTAATGATTTAACAGTCATTGATAGGGGATTTGTACACGGTGATTTTGTTGCTTCTGTTTCTGATCCAACTGGGCAAGCAGGTGTTGTGATAGATGTTAATATCTCTGTTGATTTGTTGGCTCCCGATGGATCAATTATGAAAGATATATCATCTAAAAACTTGAAACGTGTGAGAGATTTCACTGTGGGAGATTATGTGGTCCTTGGTCCATGGTTGGGTAGAATTGATGATGTATTGGATAATGTGACTGTGATGTTTGATGATGGCTCTAAGTGTAAGGTCACAAAGGCAGAGCCATTGCGGCTCAAACCAGTTTCTAAGAATATCCTTGAAGATGCAAACTTCCCTTACTATCCTGGTCAGCGTGTAAGGGCGAGTTCAACAGTTTTCAAGAATTCTAAATGGCTTTCTGGTTTATGGAAACCTAATCGCGTGGAAGGCACTGTCACTAAAGTTACAGTTGGTTCAGTGTTCATTTATTGGATAGCATCTGCTGGATATGGACCAGATTCGTCTACCACCCCAGCCGAAGAACAGACTCCAAAGAACTTAAGATTATTAACTTGTTTCTCACATGCAAATTGGCAGTTGGGTGACTGGTGTCTTCTTCCTCCTTCATCATTCTCCGCTGGCCTGACTAAGGACCCATCGCAAACAGAACTTTCTGATTCAGTAAACAACACATTAAATTCTGCACAACCGGTGGGTGCGTGTGATTCAGAGGATGCTGTGCTAGATGAATTAAGTGGGACAACTGAATCCACTGATCTTGATTCCGTCAGTGCATGCGATGGAAATTGTAGGAATCCTGTGTATAATAGTTTGCCTGAATCTAGTAGTTCTAGAGCTCTCAAGGAGACTACCCATGAGACTTGGCCTCTACACCGCAAAAAAATTCGGAAAGTTGTCGTCAGGAGAGATAAGAAGGCTAGAAAGAAAGAGGAAAACTTTGAGAGGGCCCTTCTAATTATCAATACTAAGACAAAAGTTGATGTTGCATGGCAGGATGGCGGGACAGAACTTGGACTGGATTCAACAAGCTTGATTCCAATTGATAATCCAGGTGATCATGAATTTGTGCCAGAACAGTACGTGGTTGAGAAGGCCTCCGATAATGATGATGATGTTAACGAAAGCAGACGAGTTGGAGTTGTGAAAAGTGTTCATGCAAAGGAGCGAACAGCTTGTGTGAGGTGGTTAAAACCAGTCTCCAGGGCAGAGGATCCTCGAGAATTTGACATAGAAGAAACTGTTAGTGTGTATGAGCTAGAGGGGCATCCAGATTATGACTACTGTTACGGTGATGTGGTTGTTCGATTGTCCCCTATTTCTAATTCTGCAGAGGCAATGTCTTTGGGAACCAATACAGAGGAATTAAAGCAGCAGAATTCAACGGACGAGATGATGAGTTGTTCAGAAAAGGCTTCAGGAAGCCAGAAAATAGAAGATCCATCATGTAGTGATGATTGCATCGACTTCTCAGATCTCTCTTGGGTTGGAAATATAACTGGTCTTAAGAGTGGTGATATTGAAGTTACTTGGGCTAATGGCATGGTTTCAACGGTTGGCCCTCAAGCAATTTATGTTGTTGGTCGAGATGATGATGATGAATCAATTGCTGCTGGTAGTGAAGTAAGTAATGGTGGTGCAAGTTGGGAAACAGTTGATGATGATGAAATGGATTCTGTTGAGAATGCCAAGGAGGATATTGAACTGCAAGATACTGGTGCAAATTCTGAAGAGGAAGAAAGTGAACAGAATAATTCAGGAAGAAATCTAGCTCTTTCTGTTCCACTTGCTGCACTTCGATTTGTTACTAGATTGGCTGCTGGAATATTCTCACGAGGACCAAGAAATCCAGATTCAATGGATTTGGATTCCCACAGTGACAGTGAGACTCAATCCTTGGAAATTCAAGCTTCAGAGGAAAAAGATTCTGGGCTTCATTCTAGCTCTCTTAAATCCAACTCTTTTGATGCTTCTGATATGAACTCTGATTGTGGAACGGAAGAGGATAATGTTGCTTCAGAGCCATCAGAAGTGTTAGAATCGGCAAAAGCTTCAAGCAACCTGAGGACTGCAGAATCAGATGCTTCAGCATGCCACGAAGATGGCACCTGCAGCTTCAAAGGCTTTGATATAGCTAAAGATCCTTTGGACCATTATTTTCTTGGTACAAATGGACAAACTAACAATGGAAGGAAATGGCTCAAGAAAATCCAGCAAGATTGGAGTATCCTCCAGAATAATTTGCCAGATGGGATATACGTTCGAGTCTATGAAGACCGTATGGACCTTTTGAGAGCAGTTATTGTTGGGGCCTACGGGACCCCTTACCAAGATGGCCTCTTCTTCTTCGATTTTCACCTCCCACCAGAGTATCCCGACGTTCCGCCATCAGCATATTATCATTCAGGTGGGTGGCGGATAAATCCCAATCTTTATGAGGAAGGCAAAGTCTGCCTTAGCCTTCTAAATACTTGGACTGGCAGAGGAAATGAAGTGTGGGATCCGAAATCCTCTAGCATCCTTCAAGTGTTGGTCTCGCTTCAGGGATTAGTGTTGAATTCTAAACCGTATTTTAATGAAGCTGGATACGACAAGCAAGTTGGAACAGCAGAAGGAGAGAAAAATTCCTTGTCGTACAATGAAAACACTTTCTTATTAAACTGCAAGACAATAATGTATCTTATGAGGAAGCCTCCCAAGGACTTTGAAGAACTCGTTAAAGAACATTTCAGGAGGCGTGGATATTTCATCCTGAAGGCCTGTGATGCTTACATGAAAGGTCACTTAATTGGTTCTCTCACAGAAGATGCTTCTATAAGAGAAGAAAGCGATCCCAACTCGACTTCTGTTGGATTTAAGCTTATGCTCACTAAGATTATTCCAAAGCTCTTCTCATCATTGAACGAAGTCGGAGCTGATTGTCAAGATTTTAAGCATTTTCAACAATTGTAG 3432 41.49 MEQQDSVDKESLIGTCNRDGVSSSENIHITTINNDETRRKNENTSDKPNIPHIYRQDIVKSKGSGMIGIVTEVAGDADSDSDITDDEDEDDDGEDGGDDDGCDDNDGDGENEGQNKENFGDDSNAKNTNGDNYKSQPLPDDEVRVLWMDESETTQNVNDLTVIDRGFVHGDFVASVSDPTGQAGVVIDVNISVDLLAPDGSIMKDISSKNLKRVRDFTVGDYVVLGPWLGRIDDVLDNVTVMFDDGSKCKVTKAEPLRLKPVSKNILEDANFPYYPGQRVRASSTVFKNSKWLSGLWKPNRVEGTVTKVTVGSVFIYWIASAGYGPDSSTTPAEEQTPKNLRLLTCFSHANWQLGDWCLLPPSSFSAGLTKDPSQTELSDSVNNTLNSAQPVGACDSEDAVLDELSGTTESTDLDSVSACDGNCRNPVYNSLPESSSSRALKETTHETWPLHRKKIRKVVVRRDKKARKKEENFERALLIINTKTKVDVAWQDGGTELGLDSTSLIPIDNPGDHEFVPEQYVVEKASDNDDDVNESRRVGVVKSVHAKERTACVRWLKPVSRAEDPREFDIEETVSVYELEGHPDYDYCYGDVVVRLSPISNSAEAMSLGTNTEELKQQNSTDEMMSCSEKASGSQKIEDPSCSDDCIDFSDLSWVGNITGLKSGDIEVTWANGMVSTVGPQAIYVVGRDDDDESIAAGSEVSNGGASWETVDDDEMDSVENAKEDIELQDTGANSEEEESEQNNSGRNLALSVPLAALRFVTRLAAGIFSRGPRNPDSMDLDSHSDSETQSLEIQASEEKDSGLHSSSLKSNSFDASDMNSDCGTEEDNVASEPSEVLESAKASSNLRTAESDASACHEDGTCSFKGFDIAKDPLDHYFLGTNGQTNNGRKWLKKIQQDWSILQNNLPDGIYVRVYEDRMDLLRAVIVGAYGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQVGTAEGEKNSLSYNENTFLLNCKTIMYLMRKPPKDFEELVKEHFRRRGYFILKACDAYMKGHLIGSLTEDASIREESDPNSTSVGFKLMLTKIIPKLFSSLNEVGADCQDFKHFQQL 1143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24777359 24782874 - CcPI632755_02g013050.1 Cco02g1305 172062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1305 1143 SMART ubc_7 895 1052 - -
Cco02g1305 1143 SUPERFAMILY UBC-like 876 1059 IPR016135 -
Cco02g1305 1143 MobiDBLite consensus disorder prediction 778 806 - -
Cco02g1305 1143 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 40 1139 - GO:0061631(PANTHER)
Cco02g1305 1143 Pfam Ubiquitin-conjugating enzyme 897 1028 IPR000608 -
Cco02g1305 1143 MobiDBLite consensus disorder prediction 728 748 - -
Cco02g1305 1143 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 892 1052 IPR000608 -
Cco02g1305 1143 CDD UBCc 895 1045 IPR000608 -
Cco02g1305 1143 MobiDBLite consensus disorder prediction 72 139 - -
Cco02g1305 1143 FunFam Probable ubiquitin-conjugating enzyme E2 23 856 1131 - -
Cco02g1305 1143 MobiDBLite consensus disorder prediction 807 829 - -
Cco02g1305 1143 MobiDBLite consensus disorder prediction 120 135 - -
Cco02g1305 1143 MobiDBLite consensus disorder prediction 1 54 - -
Cco02g1305 1143 MobiDBLite consensus disorder prediction 8 31 - -
Cco02g1305 1143 Gene3D Ubiquitin Conjugating Enzyme 858 1125 IPR016135 -
Cco02g1305 1143 MobiDBLite consensus disorder prediction 839 853 - -
Cco02g1305 1143 MobiDBLite consensus disorder prediction 32 46 - -
Cco02g1305 1143 MobiDBLite consensus disorder prediction 770 854 - -
Cco02g1305 1143 MobiDBLite consensus disorder prediction 369 392 - -
Cco02g1305 1143 MobiDBLite consensus disorder prediction 78 108 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1305 K10581 - - csv:101220698 2033.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1305 Cco-Chr2:24777359 Cco11g1858 Cco-Chr11:31273190 7.70E-85 dispersed
Cco02g1305 Cco-Chr2:24777359 Cco04g2085 Cco-Chr4:34791210 3.70E-172 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g177 . . . . . . . . . . Cma02g00267 Cma20g00742 . Car20g00644 . . . . . . . . . . . . . . . . . Cone12ag1239 Cone8ag1294 . . Lsi10g00504 . . . . . . . . . . . . Cmo02g00263 Cmo20g00740 . . . . . Cpe05g01365 Bhi10g01829 . . . Hepe08g0305 . . Cla02g01178 Cam02g1257 Cec02g1266 Cco02g1305 Clacu02g1239 Cmu02g1206 Cre02g1521 . Csa02g01403 . Cme11g00370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005071 2 3 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 41