Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1308 ATGGGAGCTTCCATTCAAGTGTTAATTGCTATGCGGATATTTTGGAGGGTTGTTTGGGATGGTCTCCTATGGTACAAAGATAGTGGGCAGCATGCCAATGGTGAGTTTTCAATGGCTGTAGTTCAGGCTAACAATTTACTTGAGGATCAAAGCCAGATGGAGTCGGGCAATTTGAGCTTGCACGAGGCCGGGCCATATGGTACCTTTGTTGGTGTGTATGATGGGCATGGAGGGCCCGAGACATCTCGTTATGTAAATGATCACCTTTTCCAGCATCTTAAAAGGTTTACTTCAGAGCAACAATCCATGTCAGTGGATGTCATACGGAAGGCATTTCAAGCTACCGAAGAGGGGGTCATTGCTCAAGTTTCGAAACAATGGTCAATGAGGCCTCAAATTGCAGCTGTTGGATCTTGCTGCCTTGTCGGTGTAATTTGTGGTGGAACCCTTTACATTGCTAACCTTGGTGATTCACGAGCTGTTTTAGGGAGAGTTGTAAAGGCAACAGGGGAAGTTTTGTCCGTTCAGTTGTCAGCTGAGCATAATGCATCTATAGAGTCTGTGAGGCAGGAGCTCCGTGCCCTGCATCCTGATGATCCACATATTGTAGTCTTGAAGCATAATGTATGGCGCGTGAAGGGTCTTATACAGGTTTCTCGATCTATTGGTGATGTCTATTTAAAGAGAGCTGAGTTCAACCGAGAGCCTCTTTATTCTAAGTTCCGCCTTCGTGAACCTATCAAAAAACCCATACTGAGTGCCGAACCATCTATTTCAGTGCTCCAATTGCAGCCACAGGATCAATTTATTATATTTGCTTCAGATGGGCTCTGGGAACATCTTAGCAATCAGGAAGCTGTTGATATTGTCCAAAACCATCCACGTAATGGAAGTGCAAGAAGGCTGGTGAAAGCAGCACTGCAAGAGGCAGCAAAGAAGAGAGAAATGAGGTACTCTGATTTGAAGAAGATTGACCGTGGTGTACGGCGACATTTCCACGATGACATCACAGTGATTGTTGTGTTTCTCGACTCAAACCTTGTAGCTTCCAACAGAGATAAAGTGGAGACAGGCATCAATCCTTTTACTATACACTATACTGAAACTCATCGGATGAATACAGATAACATCTTCACAGAAGACAATACGGGTCAAATACGTCTTTTGAAGGGAGAAGAAGAAGCTGTTGCTGCTGCTTTAGCTTTGGCCAACAAAGAAATGGGTTGTGTTGCCTCAAAGTTAGAGGAAGAAGAAGAAGTAGTTTCCATTTGTAGAGAAAGAAAACGCCACTTAAAGTTAGCTGTTGAGAGAAGGTATGCTCTTGCAGAGGCACATTGTAAATATTGTCAAGCTTTATATGCTGTTTCAGCTGCCATTAAGCTATTTGTAGCTCGCCATTCTTCTCCTTCTCCTTTCCTCATTACATTCCCTCCTCCGTGTTCTCCTTCTCCTCCTCCTTCAGAAAAAGTTATAACCAATCCAATGTTTCTTCAGCAAATGCCTTCTGATTCCACCCATGAAGCCATACCTGCTTGCCCTTCATGTGTTTCTTCTTCTTCAACCTCTACAGAATCCTCCATTGAAGAAAGAGAAGAAGAATCAGTAGAAGAGGAGAGGATTGAACAAGTCCCTCCATATTTCTACATGCAAATGCCACCCCCAATGCCATCTCCTCAGAGGGAGTTTGGATGGGATTTCTTCAATCCATTTGACACAATGAGGACCGATGTCATCGGCGAATATCGTGAGGACGAGCTCAGGATGGTGAGGGAGGAAGAAGGAATTCCAGAGCTGGAAGAGGCTGAGGTAGAGAAAGAAGAGCAAAACCAGAGAGTTGTGGCTGTTGCTGAGGAGGAAGATGTTGGAGCTTTTAAAGAGCAGAGGAATGGAGTTGAGATGGTTAAAGTTGGAGAGAAGGAAGATGAAGGTCAAATGAAGCAGAAAGGGCTAACAGTCATTGATACACCAGTGGAAGGAAGGGAACTTTTGGAAGCATTGCAAGATGTTGAGGATTATTTCATTAGGGCTTATGATTCTGGAATTGATGTTTCTAGGATGTTAGAGGCCAACAAAATTCAGCTTCAGTCTGGTTTAGAAGAAATAAAAGAGAACTCGACAAAACTCATCCAAGCAATAACTTGGCACCGGTCTGCTTCGGGCAAGCCTTCATCATGTAAGAGTCTAGTAGCATCGAGTTCGAAAGGTTCTTCAGCATGGACAGAGTTTAAAAATGAGCTGTTCGATGATTACGACGTAATGGACTCAGGAAGCCATTCATCGACTCTCGGACGACTATATGCTTGGGAGAAGAAGCTCTACGAAGAGGTCAAGGCTGGGGACAGCATGCGCAAACTGTACGAGAAAAGGTGTTCACGACTAAGAAACCAGGACATTAAAGGGGACAATGGAGTTGCTACTGATAAAACTCGAGTTGCAGTAAAAGATTTATATGCCAGGATATTGGTCGCCATTCGGAGTGCTGAATCAATCTCAATGAGAATTGAGAAACTACGAGATGACGAGCTACAACCTCAGATTGTCGAGCTGTTAAAAGGCTTAACAAGAACATGGAAAATCATGTTGGAAGTTCATGAAACCCAGAAAAGGATTATCCTTGAAGTGAAGACTTATTCCTGCCATTCCTATCTGAAATTCTGTAACGAATCTCATCGTCTTGCAACTCTTCAGCTTGGGGCCGAGCTTCAGAATTGGCGTTTGTGTTTTTCAAAATACGTTGAATCACAAAAGGCTTATGTTGAAGCTCTCCATGGATGGCTGACCAAGTTTGTAGTGCCTGAGGTTGAGTTCTATTCTCGGGGTCGAGCTTCAGCTGTGCCTTATGGGCTGCACGGACCTCCATTGCTTTCAATCTGCCATGATTGGCTATCTTCCATGGAAAAATTACCTGATAAACCAGTAGCCTTTGCATTGAAAAGCTTTGCAAAGGATATGAAAGCTCTATCAGATAAACAGATGGAGGAGCAGCACCAAAAGAGAAGAGTTGAAAGTCTTGGAAAGGAACTCGACCGAAGGATCCTGTCACTCCAGAAAACGGAGAACAAGTTCTTCGAGTTCAACTTTACCGAGATGAAATCAGAGCTGGAAATGGAAAATCAGAACGAGTACTTAACAGAAAAGAAAGATCAGCTGGACATGTTCAGGAAGAAGCTTGAGTTGGAAAAGGAAAAACACAATAACTGCATTCAAGAAGCACAAAGGATTACATTAAATGGAATCCAAACAGGGTTTTCTGCAGTTTTTGAATCCTTATCAGAATTCTCCAAGGCATCCCAAATAATTTCTGAGACTCGAGGCATCATCAATGGCAGTTGCAAAGCTTTGTCTTCATATGTCTTTCATAATAATCCCCTCTGTATAATGCTGGGAGAGCGATGGAGCATCTCCAGAGGCCGTCCTGTGTTACAGAAAGTGCTGAAGGATCTCGATAAGCCATTAGCCAATGGTCGCCACCTGACAGTTGTCTTTCAACAAAGGGGTACAGGAAGGCATTTGGAGGGTGGACCGTTCTTACCAAATAGCTTTAAGTGCAAATGCAACAAAATATCGGCTCTAAAACAGTCCGAACCAATATCCCACGCGATTGCAATGGAAGAACAGTGGGGATAG 3627 43.56 MGASIQVLIAMRIFWRVVWDGLLWYKDSGQHANGEFSMAVVQANNLLEDQSQMESGNLSLHEAGPYGTFVGVYDGHGGPETSRYVNDHLFQHLKRFTSEQQSMSVDVIRKAFQATEEGVIAQVSKQWSMRPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRVVKATGEVLSVQLSAEHNASIESVRQELRALHPDDPHIVVLKHNVWRVKGLIQVSRSIGDVYLKRAEFNREPLYSKFRLREPIKKPILSAEPSISVLQLQPQDQFIIFASDGLWEHLSNQEAVDIVQNHPRNGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVASNRDKVETGINPFTIHYTETHRMNTDNIFTEDNTGQIRLLKGEEEAVAAALALANKEMGCVASKLEEEEEVVSICRERKRHLKLAVERRYALAEAHCKYCQALYAVSAAIKLFVARHSSPSPFLITFPPPCSPSPPPSEKVITNPMFLQQMPSDSTHEAIPACPSCVSSSSTSTESSIEEREEESVEEERIEQVPPYFYMQMPPPMPSPQREFGWDFFNPFDTMRTDVIGEYREDELRMVREEEGIPELEEAEVEKEEQNQRVVAVAEEEDVGAFKEQRNGVEMVKVGEKEDEGQMKQKGLTVIDTPVEGRELLEALQDVEDYFIRAYDSGIDVSRMLEANKIQLQSGLEEIKENSTKLIQAITWHRSASGKPSSCKSLVASSSKGSSAWTEFKNELFDDYDVMDSGSHSSTLGRLYAWEKKLYEEVKAGDSMRKLYEKRCSRLRNQDIKGDNGVATDKTRVAVKDLYARILVAIRSAESISMRIEKLRDDELQPQIVELLKGLTRTWKIMLEVHETQKRIILEVKTYSCHSYLKFCNESHRLATLQLGAELQNWRLCFSKYVESQKAYVEALHGWLTKFVVPEVEFYSRGRASAVPYGLHGPPLLSICHDWLSSMEKLPDKPVAFALKSFAKDMKALSDKQMEEQHQKRRVESLGKELDRRILSLQKTENKFFEFNFTEMKSELEMENQNEYLTEKKDQLDMFRKKLELEKEKHNNCIQEAQRITLNGIQTGFSAVFESLSEFSKASQIISETRGIINGSCKALSSYVFHNNPLCIMLGERWSISRGRPVLQKVLKDLDKPLANGRHLTVVFQQRGTGRHLEGGPFLPNSFKCKCNKISALKQSEPISHAIAMEEQWG 1208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24825880 24838408 + CcPI632755_02g013080.1 Cco02g1308 172065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1308 1208 ProSiteProfiles PPM-type phosphatase domain profile. 35 343 IPR001932 -
Cco02g1308 1208 SMART PP2C_4 27 341 IPR001932 -
Cco02g1308 1208 MobiDBLite consensus disorder prediction 507 524 - -
Cco02g1308 1208 FunFam Phosphatase 2C family protein 24 353 - -
Cco02g1308 1208 Gene3D - 25 355 IPR036457 -
Cco02g1308 1208 Coils Coil 1043 1074 - -
Cco02g1308 1208 Pfam Protein of unknown function (DUF630) 407 466 IPR006868 -
Cco02g1308 1208 SUPERFAMILY PP2C-like 47 344 IPR036457 -
Cco02g1308 1208 Pfam Protein phosphatase 2C 66 311 IPR001932 -
Cco02g1308 1208 PANTHER UNCHARACTERIZED 407 1097 - -
Cco02g1308 1208 CDD PP2Cc 36 343 IPR001932 -
Cco02g1308 1208 ProSitePatterns PPM-type phosphatase domain signature. 69 77 IPR000222 GO:0043169(InterPro)
Cco02g1308 1208 Pfam Protein of unknown function (DUF632) 662 985 IPR006867 -
Cco02g1308 1208 Coils Coil 598 618 - -
Cco02g1308 1208 MobiDBLite consensus disorder prediction 507 539 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1308 Cco-Chr2:24825880 Cco04g1830 Cco-Chr4:33120802 8.20E-162 dispersed
Cco02g0377 Cco-Chr2:3451440 Cco02g1308 Cco-Chr2:24825880 1.30E-54 transposed
Cco02g0737 Cco-Chr2:7610993 Cco02g1308 Cco-Chr2:24825880 1.10E-109 transposed
Cco02g1188 Cco-Chr2:21643755 Cco02g1308 Cco-Chr2:24825880 1.30E-43 transposed
Cco02g2569 Cco-Chr2:37987199 Cco02g1308 Cco-Chr2:24825880 4.30E-57 transposed
Cco07g1032 Cco-Chr7:23694088 Cco02g1308 Cco-Chr2:24825880 2.70E-64 transposed
Cco11g1226 Cco-Chr11:24373997 Cco02g1308 Cco-Chr2:24825880 8.40E-67 transposed
Cco11g1633 Cco-Chr11:29152242 Cco02g1308 Cco-Chr2:24825880 6.50E-56 transposed
Cco02g0433 Cco-Chr2:3904189 Cco02g1308 Cco-Chr2:24825880 1.20E-157 wgd
Cco02g1308 Cco-Chr2:24825880 Cco04g1814 Cco-Chr4:33010610 1.70E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1308 - - - 0.0