Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1315 ATGAGAGCTCATCGTTTGAGCTTCTTCACTTCCTTTGTATTTTTATTCCCTACATTCATCACAGCCACAGGCTTCACGCTTCTCCACGATTCCTCCATTTCCTACAGGAGAATTCTTCATCAGCCGCTCTTTCCGGTTGCCTCTGAGCCGCCGCCTGACATTGACTTGTCTCCACCGCCCCCGCCGCCGGATTCTCCTTCCGACGATCAGCCGTTTTTCCATGAGCTGCCCACCAGTCCAGATCAGAGTCAACCTCCTCCTTCCTCATCTAATGGAACTATGCCAATCCCTGCCTCTACGGCGCAACCGTCCAAGCCCACTAAGACTGTTGCAATTGCCATTTCCGTTGGGATTGTGACTTTAGGGATGCTTTCAGCTCTCGCTTTCTTTTTGTATCGTCACCGTGCGAAGCATCCGGGGGAGTCGCAGAAGCTTGTTGGAGGGAATAATCCGGAGAGATTTGTGGAGGACTCCAGAGCGCCGCCCTCGAGTTTTTTCTATATCGGAACTGTTGAGCCGAGTCAGAGCTCTATTGTGGAGCAGAATGGTGCCAATGGTGCTAACAGTTCGCCTTATCGCAAGCTGAATTCGATTAAGAGGTCGGATCGGTATCGTCCGAGTCCAGAGTTGCAGCCACTGCCGCCACTGCCAAAACCGCCGGTGGCTATGTCGCCTCCGGCTTTGTCGTCTTCCGATGAGGAAAGCCAGGACACGGCATTTCATACTCCGCAATGCTCGTCGATTGTTAGTCACGATGATGGCTATTTTTCACCGGCTTCTCGTCGGAGTAATTCGGTTAAGAGCTGTTCCACGGCAAGTTTCAAGAATGACCATATGAATTCCAATCCTCCTCCCATTCCTCATTCCAAAAGGACATCTCCTAAATCGAGATTTTCGGTTTCTTCGACGAAGCGCACTTCGTCTCAGCCTCAGCCACCGCCTCCGCCGCCTCCTCCACCGCGTCCGTTTGATGATTTTCGCGAAATTCCGAATTCGAAAGAGACAATGCCTTTCTCGTCCACGAGACCTAAATTTTCGAAGCCTCCTCCTCCGCCGAATTTGGCGCTTCTTCAAACAATTAGCAATTCAACCACATTTCCTCAAGTTCCGCAACCTGCTGTAGCTCCACCTCCGCCTCCACCTCCACCTCCACCTCCGCCGCCCCCACCCCCACCTCCACCTCCGCGACCACCGGCGCGTCCGGCCTCCTATTCAACGCCACAAAAACTAGGGTTATCAGAAACCAGAATGTCGGCAGTCACTCCTCCAGACTCCTCTAAGTCACAATCCTACTCAACAGCGAGGTCAAACTCTTCCCCGAAATCCACACCGAGTTCTGTGACAACAAATTCTGCTAAAGAAGACGTTGCCCCGAGGATTAATTCTATGGAGAGGCTCGAAGCAGAGGATGCAGAAGGTGCAAAACCGAGATTGAAGCCCTTGCACTGGGACAAAGTACGAGCAACCTCAGACCGAGCTACAGTTTGGGATCAACTTAAATCAAGCTCATTCCAATTAAACGAGGACATGATGGAGACACTGTTCGGCTTCAATTCTGCAAATTCTGTTCCCAAAGAGGCCACGAGGAAGTCTGTTCTTCCCCCCGTTGAGAAGGAAAATAGGGTATTGGACCCAAAAAAGTCTCAGAACATAGCAATACTTCTAAGAGCACTTAATGTCACGCGCGATGAGGTGATCGAAGCTCTTCAAGATGGTAACCCAGAAGGCTTTGGTACTGAGCTCTTAGAAACTCTTGTAAAGATGGCTCCAACCAAAGAGGAAGAGATAAAACTCAGAGAGTACTGTGGTGATGTTTCAAAATTAGGGACTGCAGAAAGATTTCTCAAGGCAGTGCTTGAAGTTCCATTTGCCTTTAGAAGAGTTGAGGCAATGCTGTACAGAGCCAATTTTGATTCAGAAGTAAAGTACCTAAGGAAATCTTTCCAAACCCTTGAGGGTGCAAGTGAAGAATTGAAGAACAGTAGACTTTTTCTTAAACTCCTTGAAGCGGTTCTTAAGACAGGAAATAGGATGAATGTTGGTACGAATCGTGGTGATGCTAAAGCCTTTAAGCTTGAAACCCTCTTAAAATTAGTCGATATAAAGGGAACGGATGGGAAGACAACATTGCTTCATTTTGTTGTTCAAGAAATCATCAGATCAGAAGGTGGTACTGATTCAACTAATGACCTTCAACCCCGTTCGCAAGCTAAAATCGAGGATGAATTCAGAAAGCAGGGCTTGCAAGTTGTGGCTGGACTAAGCAGAGACCTCACCAATGTAAAAAAAGCGGCAGGGATGGACTCAGACGTCTTGAGCAGTTATGTCACAAAGCTCGAGATGGGGCTTGAAAAAGTAAGGTTGGTTTTGCAATTTGAAAGGCCAGGAATGCAGGGAAAATTCTTCAACTCAATGAAAACATTCTTGAAAGAGGCAGAAGAGGAAATAGTCAGGATTAAAGCTGACGAAAGGCAAGCTTTATCGCTTGTGAAAGCAGTCACAGAGTATTTCCATGGTGATGCTGCTAAGGAGGAAGCACATCCCTTCCGAATATTCATGATCGTTCGGGATTTCCTAACCGTACTGGATCAAGTATGCAAAGAAGTTGGGAGAATGCAAGACGGAGTAATGGTTGGTGCTGCCAGATCCTTTCGGATATCTGCTACAGCCTCACTCCCAGTCCTCAGCAGGTATAACGTCAGACACGACCGAAGCTCCGACGAGGATAGCTCATCTCCATGA 2742 48.21 MRAHRLSFFTSFVFLFPTFITATGFTLLHDSSISYRRILHQPLFPVASEPPPDIDLSPPPPPPDSPSDDQPFFHELPTSPDQSQPPPSSSNGTMPIPASTAQPSKPTKTVAIAISVGIVTLGMLSALAFFLYRHRAKHPGESQKLVGGNNPERFVEDSRAPPSSFFYIGTVEPSQSSIVEQNGANGANSSPYRKLNSIKRSDRYRPSPELQPLPPLPKPPVAMSPPALSSSDEESQDTAFHTPQCSSIVSHDDGYFSPASRRSNSVKSCSTASFKNDHMNSNPPPIPHSKRTSPKSRFSVSSTKRTSSQPQPPPPPPPPPRPFDDFREIPNSKETMPFSSTRPKFSKPPPPPNLALLQTISNSTTFPQVPQPAVAPPPPPPPPPPPPPPPPPPPPRPPARPASYSTPQKLGLSETRMSAVTPPDSSKSQSYSTARSNSSPKSTPSSVTTNSAKEDVAPRINSMERLEAEDAEGAKPRLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGFNSANSVPKEATRKSVLPPVEKENRVLDPKKSQNIAILLRALNVTRDEVIEALQDGNPEGFGTELLETLVKMAPTKEEEIKLREYCGDVSKLGTAERFLKAVLEVPFAFRRVEAMLYRANFDSEVKYLRKSFQTLEGASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGGTDSTNDLQPRSQAKIEDEFRKQGLQVVAGLSRDLTNVKKAAGMDSDVLSSYVTKLEMGLEKVRLVLQFERPGMQGKFFNSMKTFLKEAEEEIVRIKADERQALSLVKAVTEYFHGDAAKEEAHPFRIFMIVRDFLTVLDQVCKEVGRMQDGVMVGAARSFRISATASLPVLSRYNVRHDRSSDEDSSSP 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24954984 24958906 + CcPI632755_02g013150.1 Cco02g1315 172072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1315 913 MobiDBLite consensus disorder prediction 208 224 - -
Cco02g1315 913 MobiDBLite consensus disorder prediction 49 106 - -
Cco02g1315 913 ProSiteProfiles Formin homology-2 (FH2) domain profile. 468 888 IPR015425 -
Cco02g1315 913 SMART it6_source 468 877 IPR015425 -
Cco02g1315 913 MobiDBLite consensus disorder prediction 458 473 - -
Cco02g1315 913 MobiDBLite consensus disorder prediction 370 402 - -
Cco02g1315 913 MobiDBLite consensus disorder prediction 406 456 - -
Cco02g1315 913 MobiDBLite consensus disorder prediction 228 307 - -
Cco02g1315 913 MobiDBLite consensus disorder prediction 85 106 - -
Cco02g1315 913 MobiDBLite consensus disorder prediction 308 325 - -
Cco02g1315 913 PRINTS Proline rich extensin signature 330 346 - -
Cco02g1315 913 PRINTS Proline rich extensin signature 200 212 - -
Cco02g1315 913 PRINTS Proline rich extensin signature 214 230 - -
Cco02g1315 913 PRINTS Proline rich extensin signature 301 322 - -
Cco02g1315 913 PRINTS Proline rich extensin signature 365 390 - -
Cco02g1315 913 MobiDBLite consensus disorder prediction 198 473 - -
Cco02g1315 913 MobiDBLite consensus disorder prediction 49 68 - -
Cco02g1315 913 SUPERFAMILY Formin homology 2 domain (FH2 domain) 385 873 - -
Cco02g1315 913 Coils Coil 809 829 - -
Cco02g1315 913 Gene3D Formin, FH2 domain 462 873 IPR042201 -
Cco02g1315 913 PANTHER FORMIN-RELATED 16 907 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Cco02g1315 913 Pfam Formin Homology 2 Domain 473 862 IPR015425 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1315 Cco-Chr2:24954984 Cco07g0242 Cco-Chr7:2495221 6.20E-146 dispersed
Cco02g1315 Cco-Chr2:24954984 Cco02g0897 Cco-Chr2:10793166 9.80E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1315 K28090 - csv:101208011 1431.39