Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1316 ATGGGAGGAAGTAGAAAATTGAGCTTTGTTGTGGTTTCTGTTATTGTTTTGACATCGTTGTTTGCGGTTGTTCCGACAGCCGAAGCACAGCTCCGACGAGATTTCTACGCAGATGTGTGCCCTAATGTGGAGTCCATAGTCCGACAGGCTGTAACCAAGAAGTTCAAACAAACATTTGTCACTGTTCCCGCTACCCTCCGCCTCTTCTTCCATGATTGCTTTGTTCAGGGTTGTGATGCGTCAGTGATGATTGCTTCAACTGGAGGTAACACCGCAGAGAAGGATCATCCTGACAATCTTTCATTGGCCGGAGATGGATTTGATACCGTCATCAAAGCCAAAGCGGCGGTCGACGCTGTGCCGGGTTGTAAGAATAAAGTCTCTTGTGCCGATATTCTCGTCATGGCTACTCGAGATGTCATTTCATTGGCTAGAGGACCTTCTTATGCAGTGGAGCTAGGAAGAAAAGATGGGCTTGTTTCAAGGGCTTCAGATGTTGAAGGAAAATTGCCTCAACCAACCTTTAATCTCAATCAGCTCAATGCTATGTTTGCTGCCAATGGTCTTTCTCAAACTGATATGATTGCTCTCTCTGCTGCGCACACCGTAGGATTCTCTCACTGCAGCAAATTCGCAAATCGGATATACAATTTCAGCCGTACAAATGGAGTTGATCCAACGCTGAACGCCACATACGCTACCATGCTTCAAGGCATGTGCCCCAAAAACGTGGATCCAAGGATAGCCATAAACATGGATCCAAACACCCCCACTAGGTTCGACAATATGTACTTCAAGAATCTCCAACAAGGAATGGGCCTTTTCACTTCCGACCAAATTCTTTTCACTGATTCAAGGTCCAAGCCCACTGTCAAGATTTGGGCCCATAGTGGACAAACCTTCTACACGGCCTTCGTTGATGCCATGACCAAGTTGGGTCGGGTCGGAGTCAAGACTGGATCCAATGGCAACATCCGTACTGATTGTGGTGCTTTCAACTCTTGA 1005 46.77 MGGSRKLSFVVVSVIVLTSLFAVVPTAEAQLRRDFYADVCPNVESIVRQAVTKKFKQTFVTVPATLRLFFHDCFVQGCDASVMIASTGGNTAEKDHPDNLSLAGDGFDTVIKAKAAVDAVPGCKNKVSCADILVMATRDVISLARGPSYAVELGRKDGLVSRASDVEGKLPQPTFNLNQLNAMFAANGLSQTDMIALSAAHTVGFSHCSKFANRIYNFSRTNGVDPTLNATYATMLQGMCPKNVDPRIAINMDPNTPTRFDNMYFKNLQQGMGLFTSDQILFTDSRSKPTVKIWAHSGQTFYTAFVDAMTKLGRVGVKTGSNGNIRTDCGAFNS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24978794 24981047 + CcPI632755_02g013160.1 Cco02g1316 172073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1316 334 ProSitePatterns Peroxidases active site signature. 62 73 IPR019794 GO:0004601(InterPro)
Cco02g1316 334 Gene3D - 34 333 - -
Cco02g1316 334 FunFam Peroxidase 171 312 - -
Cco02g1316 334 PANTHER - 14 333 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g1316 334 ProSiteProfiles Plant heme peroxidase family profile. 30 333 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g1316 334 FunFam Peroxidase 34 182 - -
Cco02g1316 334 Pfam Peroxidase 47 296 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g1316 334 CDD secretory_peroxidase 30 332 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco02g1316 334 SUPERFAMILY Heme-dependent peroxidases 30 333 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g1316 334 PRINTS Haem peroxidase superfamily signature 253 268 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g1316 334 PRINTS Haem peroxidase superfamily signature 193 208 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g1316 334 PRINTS Haem peroxidase superfamily signature 127 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g1316 334 PRINTS Haem peroxidase superfamily signature 145 157 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g1316 334 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g1316 334 PRINTS Plant peroxidase signature 267 284 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g1316 334 PRINTS Plant peroxidase signature 145 160 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g1316 334 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g1316 334 PRINTS Plant peroxidase signature 251 266 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g1316 334 PRINTS Plant peroxidase signature 126 136 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g1316 334 PRINTS Plant peroxidase signature 192 204 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g1316 334 PRINTS Plant peroxidase signature 307 320 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g1316 334 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g1316 334 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g1316 334 Gene3D Peroxidase, domain 2 171 312 - -
Cco02g1316 334 ProSitePatterns Peroxidases proximal heme-ligand signature. 193 203 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1316 Cco-Chr2:24978794 Cco04g1499 Cco-Chr4:30414089 4.00E-143 dispersed
Cco05g1994 Cco-Chr5:29062166 Cco02g1316 Cco-Chr2:24978794 3.40E-115 transposed
Cco02g1316 Cco-Chr2:24978794 Cco04g1824 Cco-Chr4:33083424 3.20E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1316 K00430 - csv:101208254 597.43