Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1323 ATGAAAGAGAGAAATGAAGAGAGAAAATTAAAGCAATTCAAAGGGATAAGGATGAGAAAATGGGGAAAATGGGTTGCCGAAATCCGAGAGCCTAATAAACGCTCTCGAATTTGGCTCGGTTCTTATTCCTCTCCCGTCGCCGCCGCCCGTGCCTACGACGCCGCCGTCTTCCACCTCCGTGGCCCCACCGCCCGCCTTAATTTTCCTGACTTTTTCACCACCGTTGACCGCTCCTTCCCTCTCTCCGCCGCTGCCGTCCGCAAGATCGCCGCCGAGGTCGGCGCCCATGTCGACGCCCTCGAGTCGTCCCTCCGACATCACTTCGTCCATTCCTCCGACCAAAGTCCCAACCCCACGAAGCTTCGTTCTTCTTCAAGTGGGTTTTCCGATCGGGTCGACTTGAATAAATTCCCTGACCCGGAAGACGCCGATGGCGACTGCGCTAGCACTCATTGGACAAGCTGA 465 55.7 MKERNEERKLKQFKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDAAVFHLRGPTARLNFPDFFTTVDRSFPLSAAAVRKIAAEVGAHVDALESSLRHHFVHSSDQSPNPTKLRSSSSGFSDRVDLNKFPDPEDADGDCASTHWTS 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25032317 25032781 + CcPI632755_02g013230.1 Cco02g1323 172080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1323 154 MobiDBLite consensus disorder prediction 109 131 - -
Cco02g1323 154 MobiDBLite consensus disorder prediction 108 154 - -
Cco02g1323 154 CDD AP2 11 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1323 154 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1323 154 PRINTS Ethylene responsive element binding protein signature 51 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1323 154 ProSiteProfiles AP2/ERF domain profile. 12 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1323 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 6 145 - -
Cco02g1323 154 SMART rav1_2 12 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1323 154 FunFam Ethylene-responsive transcription factor 2 11 70 - -
Cco02g1323 154 Pfam AP2 domain 12 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1323 154 Gene3D AP2/ERF domain 11 70 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1323 154 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1323 Cco-Chr2:25032317 Cco05g2274 Cco-Chr5:31455193 7.30E-39 dispersed
Cco02g1323 Cco-Chr2:25032317 Cco04g1453 Cco-Chr4:29969044 2.40E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58769 PF00847 AP2 2.90E-11 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1323 K09286 - csv:101209150 248.44