Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g1325 | ATGTGGGATCTCAATGATTCTCCCGATCATGGCGGAACTGATGAATTTGAGGTTCTTTCATCGATTGATGGCGATGAAGACAGAGCGAAATGGATAGGATCCATTAATTCTAACTCAAGCTCTTCGGTGGTGGTTATGGAGGATGGATCCGACGCCGACGAGGCTAGCGTCGGCGAGGATGAACCACTAGTCCATCGGAAAAACTTCTCGGTGACCCACCCGCTGGCGACCCGGCAGTTCTTCCCCTTGGAGGATTCCGACGTTGGGGCATCATCGGCCGCCGTCGATGGTTCAGCTACGTTCCCTCGAGCTCGGTGGGTCGGCGTGAAGTTCTGCCAAACAGAGCCTGTCGCTGCTGTGAGACCAATGGCGGTTCTGCAGCCGATAAAGAAAAGCCGGCGAGGGCCTAGGTCCCGGAGTTCTCAATACCGCGGCGTCACGTTCTACCGGCGCACCGGCCGGTGGGAATCTCACATATGGGACTGTGGCAAACAAGTTTATCTGGGCGGATTTGATACTGCTCATGCAGCTGCTCGAGCCTACGACAGGGCGGCTATAAAGTTTCGAGGATCAGAGGCAGACATAAATTTCAGTATTGAAGACTACGATGAGGATTTGCAGCAGATGGGAAATTTGACTAAGGAAGAATTTGTGCATGTTCTTCGTAGACAAAGCACGGGTTATCCGAGAGGAACCTCAAAATTTAGAGGTGTAACATTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGCCAGTTTTTAGGCAAAAAGTACGTTTATTTGGGGTTGTTCGATTCCGAGATCGAAGCTGCAAGAGCTTATGATAAAGCTGCAATCAAATGTAATGGCAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGGATGAGCTGAGTACAACTGAATCATCATCAGCCAAAGTCTGGGAACAGAATCTTGATTTGAGGTTGGGCAATTCAAGCTCAAAAAAACACACCGTTTCATTTGGGAATCATTGCCCAAATGTCACCCCAAATATTGATTTGCAAATTACTAATGAATCTAACCCTCAGGAATCAAATATATTTGAGAATGATAATGGTGGAAGCTGTACGTTCCTTCAGACAGAGAAAATGCAGTTTCGTGGTGGAACGATCGTTCCATCTCCACCGTCCGTCGAAATGACGAAACATGGGCGCTTGGAGACACCCATGGAATTGCAGACTCTTCACAATTACTCTCCACAGATCAATCAATCAAACTCTCAAATTCAGTTGTTGAGCAGCAGCAATGCAGGAGGGTTAGGAAGTGATGAACTTTCACTGTGTTTGAGTGAAGGCCACCAATGGCAGCAATCTGGTGGCTCTCAACAATTTGCAAATGCTGCAGCATCATCAGGATTCCCACAACTTCAAATTTCAACTTCCCAAAATTGGCTGCAGAAAAATAATGGATGCTTCTTACAGAGACCCTCTTGA | 1461 | 47.23 | MWDLNDSPDHGGTDEFEVLSSIDGDEDRAKWIGSINSNSSSSVVVMEDGSDADEASVGEDEPLVHRKNFSVTHPLATRQFFPLEDSDVGASSAAVDGSATFPRARWVGVKFCQTEPVAAVRPMAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGSEADINFSIEDYDEDLQQMGNLTKEEFVHVLRRQSTGYPRGTSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPSIYEDELSTTESSSAKVWEQNLDLRLGNSSSKKHTVSFGNHCPNVTPNIDLQITNESNPQESNIFENDNGGSCTFLQTEKMQFRGGTIVPSPPSVEMTKHGRLETPMELQTLHNYSPQINQSNSQIQLLSSSNAGGLGSDELSLCLSEGHQWQQSGGSQQFANAAASSGFPQLQISTSQNWLQKNNGCFLQRPS | 486 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 25069312 | 25072444 | + | CcPI632755_02g013250.1 | Cco02g1325 | 172082 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g1325 | 486 | SMART | rav1_2 | 234 | 297 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1325 | 486 | SMART | rav1_2 | 142 | 204 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1325 | 486 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 53 | 348 | - | - | |
Cco02g1325 | 486 | Gene3D | AP2/ERF domain | 141 | 200 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1325 | 486 | Gene3D | AP2/ERF domain | 233 | 292 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1325 | 486 | CDD | AP2 | 142 | 197 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1325 | 486 | SUPERFAMILY | DNA-binding domain | 233 | 293 | IPR016177 | GO:0003677(InterPro) | |
Cco02g1325 | 486 | FunFam | AP2-like ethylene-responsive transcription factor | 141 | 200 | - | - | |
Cco02g1325 | 486 | MobiDBLite | consensus disorder prediction | 42 | 61 | - | - | |
Cco02g1325 | 486 | SUPERFAMILY | DNA-binding domain | 141 | 199 | IPR016177 | GO:0003677(InterPro) | |
Cco02g1325 | 486 | CDD | AP2 | 233 | 293 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1325 | 486 | FunFam | AP2-like ethylene-responsive transcription factor | 233 | 293 | - | - | |
Cco02g1325 | 486 | Pfam | AP2 domain | 233 | 283 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1325 | 486 | Pfam | AP2 domain | 142 | 190 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1325 | 486 | ProSiteProfiles | AP2/ERF domain profile. | 142 | 198 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1325 | 486 | ProSiteProfiles | AP2/ERF domain profile. | 234 | 291 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1325 | 486 | PRINTS | Ethylene responsive element binding protein signature | 273 | 293 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1325 | 486 | PRINTS | Ethylene responsive element binding protein signature | 235 | 246 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1325 | Cco-Chr2:25069312 | Cco02g2225 | Cco-Chr2:34853474 | 2.60E-90 | dispersed | |
Cco02g1325 | Cco-Chr2:25069312 | Cco04g1452 | Cco-Chr4:29944712 | 3.60E-132 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58770 | PF00847 | AP2 | 2.00E-09 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g1325 | K09284 | - | csv:101208665 | 788.875 |