Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1325 ATGTGGGATCTCAATGATTCTCCCGATCATGGCGGAACTGATGAATTTGAGGTTCTTTCATCGATTGATGGCGATGAAGACAGAGCGAAATGGATAGGATCCATTAATTCTAACTCAAGCTCTTCGGTGGTGGTTATGGAGGATGGATCCGACGCCGACGAGGCTAGCGTCGGCGAGGATGAACCACTAGTCCATCGGAAAAACTTCTCGGTGACCCACCCGCTGGCGACCCGGCAGTTCTTCCCCTTGGAGGATTCCGACGTTGGGGCATCATCGGCCGCCGTCGATGGTTCAGCTACGTTCCCTCGAGCTCGGTGGGTCGGCGTGAAGTTCTGCCAAACAGAGCCTGTCGCTGCTGTGAGACCAATGGCGGTTCTGCAGCCGATAAAGAAAAGCCGGCGAGGGCCTAGGTCCCGGAGTTCTCAATACCGCGGCGTCACGTTCTACCGGCGCACCGGCCGGTGGGAATCTCACATATGGGACTGTGGCAAACAAGTTTATCTGGGCGGATTTGATACTGCTCATGCAGCTGCTCGAGCCTACGACAGGGCGGCTATAAAGTTTCGAGGATCAGAGGCAGACATAAATTTCAGTATTGAAGACTACGATGAGGATTTGCAGCAGATGGGAAATTTGACTAAGGAAGAATTTGTGCATGTTCTTCGTAGACAAAGCACGGGTTATCCGAGAGGAACCTCAAAATTTAGAGGTGTAACATTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGCCAGTTTTTAGGCAAAAAGTACGTTTATTTGGGGTTGTTCGATTCCGAGATCGAAGCTGCAAGAGCTTATGATAAAGCTGCAATCAAATGTAATGGCAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGGATGAGCTGAGTACAACTGAATCATCATCAGCCAAAGTCTGGGAACAGAATCTTGATTTGAGGTTGGGCAATTCAAGCTCAAAAAAACACACCGTTTCATTTGGGAATCATTGCCCAAATGTCACCCCAAATATTGATTTGCAAATTACTAATGAATCTAACCCTCAGGAATCAAATATATTTGAGAATGATAATGGTGGAAGCTGTACGTTCCTTCAGACAGAGAAAATGCAGTTTCGTGGTGGAACGATCGTTCCATCTCCACCGTCCGTCGAAATGACGAAACATGGGCGCTTGGAGACACCCATGGAATTGCAGACTCTTCACAATTACTCTCCACAGATCAATCAATCAAACTCTCAAATTCAGTTGTTGAGCAGCAGCAATGCAGGAGGGTTAGGAAGTGATGAACTTTCACTGTGTTTGAGTGAAGGCCACCAATGGCAGCAATCTGGTGGCTCTCAACAATTTGCAAATGCTGCAGCATCATCAGGATTCCCACAACTTCAAATTTCAACTTCCCAAAATTGGCTGCAGAAAAATAATGGATGCTTCTTACAGAGACCCTCTTGA 1461 47.23 MWDLNDSPDHGGTDEFEVLSSIDGDEDRAKWIGSINSNSSSSVVVMEDGSDADEASVGEDEPLVHRKNFSVTHPLATRQFFPLEDSDVGASSAAVDGSATFPRARWVGVKFCQTEPVAAVRPMAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGSEADINFSIEDYDEDLQQMGNLTKEEFVHVLRRQSTGYPRGTSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPSIYEDELSTTESSSAKVWEQNLDLRLGNSSSKKHTVSFGNHCPNVTPNIDLQITNESNPQESNIFENDNGGSCTFLQTEKMQFRGGTIVPSPPSVEMTKHGRLETPMELQTLHNYSPQINQSNSQIQLLSSSNAGGLGSDELSLCLSEGHQWQQSGGSQQFANAAASSGFPQLQISTSQNWLQKNNGCFLQRPS 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25069312 25072444 + CcPI632755_02g013250.1 Cco02g1325 172082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1325 486 SMART rav1_2 234 297 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1325 486 SMART rav1_2 142 204 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1325 486 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 53 348 - -
Cco02g1325 486 Gene3D AP2/ERF domain 141 200 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1325 486 Gene3D AP2/ERF domain 233 292 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1325 486 CDD AP2 142 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1325 486 SUPERFAMILY DNA-binding domain 233 293 IPR016177 GO:0003677(InterPro)
Cco02g1325 486 FunFam AP2-like ethylene-responsive transcription factor 141 200 - -
Cco02g1325 486 MobiDBLite consensus disorder prediction 42 61 - -
Cco02g1325 486 SUPERFAMILY DNA-binding domain 141 199 IPR016177 GO:0003677(InterPro)
Cco02g1325 486 CDD AP2 233 293 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1325 486 FunFam AP2-like ethylene-responsive transcription factor 233 293 - -
Cco02g1325 486 Pfam AP2 domain 233 283 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1325 486 Pfam AP2 domain 142 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1325 486 ProSiteProfiles AP2/ERF domain profile. 142 198 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1325 486 ProSiteProfiles AP2/ERF domain profile. 234 291 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1325 486 PRINTS Ethylene responsive element binding protein signature 273 293 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1325 486 PRINTS Ethylene responsive element binding protein signature 235 246 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1325 Cco-Chr2:25069312 Cco02g2225 Cco-Chr2:34853474 2.60E-90 dispersed
Cco02g1325 Cco-Chr2:25069312 Cco04g1452 Cco-Chr4:29944712 3.60E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58770 PF00847 AP2 2.00E-09 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1325 K09284 - csv:101208665 788.875