Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1334 ATGGAGTGGGTTCGAGGAGACCAACTCGGCCGTGGAAATTTTGCCAAAATCAATTTAGCAAAACTAACAAAGGGGTTTGATCAGTTCCCGCCATTAATGGCCGTCAAATCCTCTGTTTCTTCTCTATCCTCTGTTTTGCTCAAGAACGAGAAGCAAATTCTGGATCGAATTGGGATTTGCCCACAGATTGTTGCTTGTTTTGGCGATGGAATCAGTGTTGAAAGTGATGGGGAGAAGTGTTATAATCTGTTCTTGGAGTATGCCAATGGCGGAAGTCTTGCGGATGTTGTGAGAATCCATGGCGGTGGGTTGCCGGAATTCGATGTTCGAAGGTACACGAAGGCGATTCTTTGGGGACTCCGGCATGTTCATGGCAATGGGTTTGTTCATTGCGATTTGAAGCTTTCGAATGTGTTGGTTTTTGGGAATGGCAATGTTAAGATCGCTGATTTTGGACTTGCTAAAGCGGCTGGAAAAATTACGGCGGCGGAAACAGAAGAGCGATTTGAGTGGAGAGGAACTCCGATGTATATGTCGCCGGAGACTGTGAACGGTGGTGAATATGAGCCGCCGTGTGATATTTGGGCGTTGGGTTGCGCCGTCGTGGAGATGGTGGCGGGAAAGCCGGCGTGGAGGGTTGGGCCGGCAACGGATATATTTGGACTGATGATGAGGATTGGAATCGGAGACGAAGTACCGGAGATGCCGGAGAATTTATCGGCGGAGGGGAAAGATTTTATCCGGCGGTGTTTGGTCAAGGATCCGAGGAAGAGATGGACGGCGGAGATGCTTTTGAACCACCCATTCGTAGCCGGTACCGGTGATACTGTTACATTGAAGGAAGCAGAAGTAGCGACGGAGTCGCCGACGGGTCCTTTCGATTTCCCGGAATTCGTTTGTTCCGAACAGGGTTCTGATGAGTGGAGTTTCTGCTCTTCTAATTCGTCGCCGGAGATTTTGAGTAGGGTCCGGCGGCTGGTGACGGGGAAGCCTTTGGATTGGTCTGTGATGGATAGTTGGGTGACAGTGAGGTGA 1035 50.05 MEWVRGDQLGRGNFAKINLAKLTKGFDQFPPLMAVKSSVSSLSSVLLKNEKQILDRIGICPQIVACFGDGISVESDGEKCYNLFLEYANGGSLADVVRIHGGGLPEFDVRRYTKAILWGLRHVHGNGFVHCDLKLSNVLVFGNGNVKIADFGLAKAAGKITAAETEERFEWRGTPMYMSPETVNGGEYEPPCDIWALGCAVVEMVAGKPAWRVGPATDIFGLMMRIGIGDEVPEMPENLSAEGKDFIRRCLVKDPRKRWTAEMLLNHPFVAGTGDTVTLKEAEVATESPTGPFDFPEFVCSEQGSDEWSFCSSNSSPEILSRVRRLVTGKPLDWSVMDSWVTVR 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25275236 25276270 + CcPI632755_02g013340.1 Cco02g1334 172091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1334 344 SMART serkin_6 3 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1334 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g1334 344 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 271 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco02g1334 344 Pfam Protein kinase domain 5 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1334 344 SUPERFAMILY Protein kinase-like (PK-like) 3 299 IPR011009 -
Cco02g1334 344 ProSiteProfiles Protein kinase domain profile. 3 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1334 344 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524(InterPro)
Cco02g1334 344 CDD STKc_MAPKKK 2 270 - -
Cco02g1334 344 Gene3D Transferase(Phosphotransferase) domain 1 2 294 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1334 Cco-Chr2:25275236 Cco09g0337 Cco-Chr9:2976537 8.00E-54 dispersed
Cco06g1310 Cco-Chr6:23340869 Cco02g1334 Cco-Chr2:25275236 1.10E-29 transposed
Cco02g1334 Cco-Chr2:25275236 Cco04g1445 Cco-Chr4:29883571 3.10E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86570 PF00069 Pkinase 2.50E-50 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1334 - - - 0.0