Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco02g1335 | ATGGCGGACGAACAGCCCTCAGCCTCCAGTCGGCGGAGGAGCCGAGGATCTGAGGCAGCTGCCCGACTTACGGCTCTCGAACGTCTCAAAGCCATCCGCAGCGGTGGCCGTCGATCGGAAGCTGGTGGTTTCCAAGTGAAGTTAGAAAACCCTATCTACGATACGATTCCAGAGGATGAGTATGATGCTCTCGTGGCAAAGCGTCGCGAAGAAGCCCGAGGGTTTATTGTCGATGACGACGGTCTTGGATATGGAGACGAAGGTGAGGAAGAAGATTGGTCGAAAGCTGGGGTTTGTTCTTCCGATGAGTCTGATGGTGAGCTAGATAAACCTAAGAAGAGGAAAGTAGAGAAGAAAGAGGCGCAACCTAAAAAACCCTCTTCTTCTTCTCTATCGGCGGCGGCAGCGATGATGGGGAAACAAAAGCTTTCTTCGATGTTTACTTCATCGATCTTCAGGAAAACGGCTAGAGACGATAAGGCTAAAGGATTGGCGTGTGATAGTATTGTGGATGATGTGATTGCGGAATTTGCGCCAGATGAGACTGATAGAGAGAGGCGTAGAAAGGGGCCAATTGGAGCTATACCGATTTCGAGGACTGTTGCGCCTGTTCCTGCTGTGAAGTCCGAGGGATTAACTGCTCAGAGTCTTAATTTGACTGGCGGGTCTGAATTGATTAAGGATAATGAATATGGGAACTCTGGAATGACCAGGGTTGTTACAGACAGTGATTTAGAGCCTGTGCGAGCTGGTGTAGAGGTCCAGGGAAATGGTGAGACTAAGGAATTTGATCCGAAGGAGGACTTGAATTCTCAAACCAACTTGGATTCGGTTGAGCAATCACCTAATTCTTCGATCAAGGAAGATGTAAATGGGGATAGCATGCCAATTATGGTAGAAACGAAGTCAGAACCGTTAGTGAAGAAGGAGCCGGTGAGTACTTTGAATGCTAAGATTAGCAATGAAAGAGACCCAGCTTTGAGTGCTACTGCGGGATGGCAAGCAGTAAGAAGTGAAGGGAGTGGAAGTGTTAATTCTGCAGCAGAAACTGCTGAAGAGAAATCCGATTTTGATGTTGACGCCGACGGCTCTCTCCCTTTCTATATCGTTGATGCGCATGAGGAGCTCTTCGGTGCAAATATGGGCACTGTATATCTATTTGGGAAGGTCAAAGCTGGGGATACGTTCCACAGTTGTTGTGTGGTGGTGAAAAATATGCAAAGATGCATATATGCCATTCCTAGTGCTTCTTTTCTCCATTCGGATGAGATGTTGGAGCTTCAGAAGGACGCTGAACAGTCTAAGCTTTCTCCTGCAGATCTGCGTGCCAAATTGCAAGAAGTGACAGCAGGATTAAAAAATGAAATGGCTAAGCAGTTGTTAGATCTCAATGTTTCAACATTTAGCATGACACCGGTGAAGCACCCCCCACTTCCCGCTGATCTAAAAGGAGAATCTTTCTGTGCTCTTTTAGGAACACATCGTAGTGCCATAGAGCTTCTCCTCATTAAAAGGAAAATTAAGGGCCCCTCCTGGTTGTCAATTTCAAAATTCTCTTCCTGTCCTGCTTCTCAACGAGTGAGCTGGTGCAAGTTTGAGGTGATAGTTGACTCCCCAAAAGATGTTCAAACTTCAACTTCATCAAGCAAAACTTTGGAGATTCCTTCTATGATTGTCACTGCAATACACATAAAGACCATCATTAATGACAGACAGAATGTCAACGAAATTGTGTCTGCATCTGTTATATGCTGTCAAAGAGCGAAGATTGACGGTCCCATGTTGGCCACAGAATGGAAAAAGCCTGGTATGCTTAGGCATTTTACTATCATCCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTGCTAAAGAATCTGCAGATAGAAATTTGAAGGCTGGATCAAATGTTCTAATCTGCGAGGGCAATGAAAGGGCATTGTTAAATCGGTTAATGATTGAATTATTCAAATTGGATAGTGATGTGTTGGTTGGGCACAATATCTCTGGGTTTGACCTAGATGTTCTTCTCCATCGAGCCCAGTTTTGCCGAGTACCAAGCAGCATGTGGTCCAAAATAGGTCGCCTTAAGAGGTCTGTTATGCCTAAACTTGGAAAAGGAGGGAGCATTTTTGGGTCTGGGGCAAGTCCAGGACTCATGTCTTGCATTGCTGGTCGACTCTTATGTGATACGTATTTGTCTTCCCGTGACCTATTGAAGGAGATAAGTTATTCTTTGACAGAGCTGGCAAAGACTCAACTTAATAAGGACCGCAAGGAAGTCACTCCACATGAAATTCCAAAAATGTATCAAGCATCAGAGTCTCTCATGAACCTGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTAATGTTTCATTTAAGCGTTCTTCCCCTTACTCGACAATTAACGAATATCAGTGGTAATCTCTGGGGAAGAAGCCTACAGGGTGCTAGGGCCCAAAGAGTAGAGTATCTCTTACTTCATGCATTCCATGCCAAAAAATATATTGTCCCCGACAAGACTTCATCTTATGTGAAGGAAAAAAAGATGGTAAAAAAGAGAACGAATCATAGTTCTGAGGAGAAAAATGTTGATGAATTTGATTTAGATGATGCAAATGTAGAAGCTCCCAATACTGAAAGTGGAAAAGGCAAAAAGGGGTCCTCCTATTCAGGTGGGCTAGTCTTGGAGCCAAAGCAAGGTTTATATGATAAGTATGTATTGCTCCTGGACTTCAACAGTCTGTACCCTTCCATCATTCAGGAATATAATATTTGCTTCACCACTGTTGAAAGATCTCCAGATGGTGTTGTTCCTCTACTGCCATCTAGTAAAGTGACTGGAGTTCTTCCTGAGTTGCTAAAAAATCTGGTTCAGAGGAGAAGAATGGTGAAGTCATGGATGAAGAATGCAACTGGTCTCAAGCTTCAGCAACTTGACATTCAGCAGCAGGCCCTAAAGCTCACTGCCAACAGTATGTATGGATGTCTAGGGTTTTCTAATTCAAGGTTTTATGCAAAACCGCTAGCAGAGCTTATTACTTCACAAGGAAGGGAAATACTGCAGAGCACTGTTGATCTTGTCAAGAATAATCTGAACCTAGAGGTAATTTATGGCGATACGGATTCAATAATGATTCATAGTGGACTGGATGATATTGGCAAAGTGAAAGCAATTGCAGGAAAAGTTATACAAGAGGTTAACAAAAAATACAAGTGCTTAGAAATTGATCTCGACGGTTTGTATAAGAGAATGTTGCTTCTCAAGAAAAAGAAATATGCTGCTGTAAAGTTGCAGTTTAAGGACGGAATGCCATATGAGGTTATTGAGCGAAAGGGTCTTGATATGGTTCGTCGTGACTGGAGCTTATTGTCAAAGGAATTAGGTGATTTCTGCTTGAATCAAATATTGTCTGGAGGGTCGTGCGAGGATGTCATTGAATCAATACATGACTCTCTTATGAAGATACAAGAGGATATGAGAAAAGGGCAAGTTGCACTTGAGAAATATATCATCACGAAGACATTGACTAAGCCACCTGAAGCTTATCCTGATGCCAGAAACCAACCACATGTTCAAGTTGCTCAAAGGTTAAAACAAATGGGCTATTCTACTGGCTGTTCTGTTGGTGATACGATCCCATATATTATTTGCTGTGAGCAGGGTTCTACTTCTGGTGGTTCTACAAGCATTGCTCAACGGGCTAGACATCCTGATGAATTGAAAAAAGAGGATGGAAAATGGATGATTGACATCGAATACTACCTTTCACAGCAGATTCACCCTGTGGTCTCTCGTCTATGTGCCTCAATTCAGGGCACCAGCCCAGAACGCTTGGCTGACTGTTTGGGGCTTGATTCATCAAAGTTCCAGATCAGATCAAGTGAAGTTTCCCGAAGCGATGTCTCCACTTCCCTCCTGTGTTCTGTAAATGATGAAGAAAGGTATCAGGGATGCATACCACTGACATTAACTTGCCCCAGCTGTTCTGGTACTTTTACGTGTCCTGCTATCTTTAGTTCTGTATACAAATCTACAGATGGAAAGCAAGATAAGTCAGTTGATGAACCTACAAGCAAATTTTGGAATAATTTGAATTGTCCAAAATGTCCTGACGAAGCTAATGCGGGTAGAATGACTCCTGGAATGATTGCCAACCAGGCAAAAAGGCAAGCAGATAGGTTCATTTCAATGTATTATAATGGCTTAATGATGTGTGATGATGAAACCTGCAACTATTCCACACGTGCCGTCAATCTTCGAGTTATGGGCGACTCTGAGAAAGGAACCATCTGCCCGAACTATCCCCACTGCAATGGGCATCTAGTAAGAAAGTACACAGAAGCCGATTTGTACAAGCAGCTTTCGTATTTCAGTCACATTTTGGATACCGAACGCTGTATGGAAAAGTTGGAGGTTCATGCAAGGGTGACTTTAGAGAAAGAAATGGCGAAAATTCGGCCAATAGTCGAGTTAGCTGCATCGACAATTCAAAGCATTCGGGATCGCAATGCATATGGTTGGATGCAGTTGCAAAATTTTGTGGTAACATTTTGA | 4572 | 43.22 | MADEQPSASSRRRSRGSEAAARLTALERLKAIRSGGRRSEAGGFQVKLENPIYDTIPEDEYDALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGVCSSDESDGELDKPKKRKVEKKEAQPKKPSSSSLSAAAAMMGKQKLSSMFTSSIFRKTARDDKAKGLACDSIVDDVIAEFAPDETDRERRRKGPIGAIPISRTVAPVPAVKSEGLTAQSLNLTGGSELIKDNEYGNSGMTRVVTDSDLEPVRAGVEVQGNGETKEFDPKEDLNSQTNLDSVEQSPNSSIKEDVNGDSMPIMVETKSEPLVKKEPVSTLNAKISNERDPALSATAGWQAVRSEGSGSVNSAAETAEEKSDFDVDADGSLPFYIVDAHEELFGANMGTVYLFGKVKAGDTFHSCCVVVKNMQRCIYAIPSASFLHSDEMLELQKDAEQSKLSPADLRAKLQEVTAGLKNEMAKQLLDLNVSTFSMTPVKHPPLPADLKGESFCALLGTHRSAIELLLIKRKIKGPSWLSISKFSSCPASQRVSWCKFEVIVDSPKDVQTSTSSSKTLEIPSMIVTAIHIKTIINDRQNVNEIVSASVICCQRAKIDGPMLATEWKKPGMLRHFTIIRKLDGGIFPMGFAKESADRNLKAGSNVLICEGNERALLNRLMIELFKLDSDVLVGHNISGFDLDVLLHRAQFCRVPSSMWSKIGRLKRSVMPKLGKGGSIFGSGASPGLMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLNKDRKEVTPHEIPKMYQASESLMNLIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKTSSYVKEKKMVKKRTNHSSEEKNVDEFDLDDANVEAPNTESGKGKKGSSYSGGLVLEPKQGLYDKYVLLLDFNSLYPSIIQEYNICFTTVERSPDGVVPLLPSSKVTGVLPELLKNLVQRRRMVKSWMKNATGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVKNNLNLEVIYGDTDSIMIHSGLDDIGKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGMPYEVIERKGLDMVRRDWSLLSKELGDFCLNQILSGGSCEDVIESIHDSLMKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRLKQMGYSTGCSVGDTIPYIICCEQGSTSGGSTSIAQRARHPDELKKEDGKWMIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQIRSSEVSRSDVSTSLLCSVNDEERYQGCIPLTLTCPSCSGTFTCPAIFSSVYKSTDGKQDKSVDEPTSKFWNNLNCPKCPDEANAGRMTPGMIANQAKRQADRFISMYYNGLMMCDDETCNYSTRAVNLRVMGDSEKGTICPNYPHCNGHLVRKYTEADLYKQLSYFSHILDTERCMEKLEVHARVTLEKEMAKIRPIVELAASTIQSIRDRNAYGWMQLQNFVVTF | 1523 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 25280287 | 25292128 | + | CcPI632755_02g013350.1 | Cco02g1335 | 172092 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco02g1335 | 1523 | MobiDBLite | consensus disorder prediction | 76 | 137 | - | - | |
| Cco02g1335 | 1523 | FunFam | DNA polymerase | 1119 | 1305 | - | - | |
| Cco02g1335 | 1523 | FunFam | DNA polymerase | 1314 | 1509 | - | - | |
| Cco02g1335 | 1523 | Pfam | DNA polymerase family B, exonuclease domain | 495 | 749 | IPR006133 | - | |
| Cco02g1335 | 1523 | Gene3D | DNA Polymerase alpha, zinc finger | 1314 | 1507 | IPR038256 | - | |
| Cco02g1335 | 1523 | ProSitePatterns | DNA polymerase family B signature. | 1043 | 1051 | IPR017964 | GO:0000166(InterPro)|GO:0003676(InterPro) | |
| Cco02g1335 | 1523 | MobiDBLite | consensus disorder prediction | 248 | 291 | - | - | |
| Cco02g1335 | 1523 | Coils | Coil | 1069 | 1089 | - | - | |
| Cco02g1335 | 1523 | Pfam | DNA polymerase alpha subunit p180 N terminal | 26 | 93 | IPR024647 | - | |
| Cco02g1335 | 1523 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cco02g1335 | 1523 | Gene3D | - | 555 | 871 | IPR036397 | GO:0003676(InterPro) | |
| Cco02g1335 | 1523 | Gene3D | - | 1119 | 1305 | IPR042087 | - | |
| Cco02g1335 | 1523 | PANTHER | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT | 14 | 1521 | - | GO:0003682(PANTHER)|GO:0003688(PANTHER)|GO:0003697(PANTHER)|GO:0003887(PANTHER)|GO:0005658(PANTHER)|GO:0006272(PANTHER)|GO:0006273(PANTHER)|GO:1902975(PANTHER) | |
| Cco02g1335 | 1523 | SMART | polmehr3 | 555 | 1055 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Cco02g1335 | 1523 | MobiDBLite | consensus disorder prediction | 88 | 124 | - | - | |
| Cco02g1335 | 1523 | FunFam | DNA polymerase | 555 | 869 | - | - | |
| Cco02g1335 | 1523 | NCBIfam | DNA polymerase (pol2) | 51 | 1273 | - | - | |
| Cco02g1335 | 1523 | Gene3D | - | 360 | 438 | - | - | |
| Cco02g1335 | 1523 | MobiDBLite | consensus disorder prediction | 270 | 290 | - | - | |
| Cco02g1335 | 1523 | FunFam | DNA polymerase | 953 | 1002 | - | - | |
| Cco02g1335 | 1523 | MobiDBLite | consensus disorder prediction | 855 | 895 | - | - | |
| Cco02g1335 | 1523 | PRINTS | DNA-directed DNA-polymerase family B signature | 912 | 925 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Cco02g1335 | 1523 | PRINTS | DNA-directed DNA-polymerase family B signature | 988 | 1000 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Cco02g1335 | 1523 | PRINTS | DNA-directed DNA-polymerase family B signature | 1041 | 1049 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Cco02g1335 | 1523 | Gene3D | - | 489 | 549 | - | - | |
| Cco02g1335 | 1523 | Gene3D | Helix hairpin bin | 953 | 1004 | - | - | |
| Cco02g1335 | 1523 | Pfam | DNA polymerase family B | 815 | 1276 | IPR006134 | GO:0000166(InterPro)|GO:0003677(InterPro) | |
| Cco02g1335 | 1523 | CDD | DNA_polB_alpha_exo | 555 | 806 | - | - | |
| Cco02g1335 | 1523 | SUPERFAMILY | DNA/RNA polymerases | 839 | 1291 | IPR043502 | - | |
| Cco02g1335 | 1523 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Cco02g1335 | 1523 | MobiDBLite | consensus disorder prediction | 855 | 869 | - | - | |
| Cco02g1335 | 1523 | Gene3D | Palm domain of DNA polymerase | 894 | 1099 | IPR023211 | - | |
| Cco02g1335 | 1523 | SUPERFAMILY | Ribonuclease H-like | 459 | 836 | IPR012337 | - | |
| Cco02g1335 | 1523 | Pfam | DNA Polymerase alpha zinc finger | 1315 | 1519 | IPR015088 | GO:0003887(InterPro)|GO:0006260(InterPro) | |
| Cco02g1335 | 1523 | CDD | POLBc_alpha | 888 | 1291 | IPR045846 | GO:0003887(InterPro)|GO:1902975(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g1335 | Cco-Chr2:25280287 | Cco04g1267 | Cco-Chr4:28000502 | 2.40E-49 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco02g1335 | K02320 | - | csv:101211201 | 2733.75 |