Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1344 ATGGAATCTGCCTTCCCTTCATCTTCTTTCTCTCTCTACTTCACGCGCAGAACTCGACCAACGCCAAACTGGCCAAGACCCACCTCCGAGCTCCACGCCGCCGCCGCTCACTTCGTCCTCCTGAACGCCGCCGTCATCCTCAACTTCGCGCCGATCTCCGCCAGTAGGAGGATCAGCGCCGTCGCTCGTGGTGGCCGCCGCCATTGGGTGTCGCCGAGTTGTCGCGGATTTAAGGACGTTTGGGTGACATTTCGGGTTTTGAGGCGTGGTTTCCACAATCGAAAGGGAATTTACTTCGATAGTTTCTGGTTTAAAATTGAGGTAAGGGCAAGAGCTATCGAGGTAATTGACAGGAGATTGTTATACTGGCATGGGGACGGATTAGTCATGAGCTTCCGCATCACTGAGGTGCAATGGGGGTATCATTACTTAAAACCAATTCTGGATGCCGTTGTCGATTCAGATATAGCTTCTGATGAAGAGCTTACTCAGGCATTTGAAGATCTTGATCATTCAGTGGATGAACTAAGGGTGCTGTTTGAAAATCGGCAACCGCTGTCGAGTAAAGTATACTTTGTATTGCAAACTGAAGCATTGTTATCAAAGATTGGGAAATTTAGCTTGGATATATTCCAGCTTCTTCAGTCTTCAAATGAAAATCTTCCGGAGGAATTGAGTTCAACATCTCTTGAGCACTGTGTCCAAAAAATTAAGCATATTGGAAAGGAAGAAATATCTTTCGTTATTAAAGATGCCATAAGGAATCAAGTAGATGGCATTGCTCCCAGCTCAGATGTTTTGGTGAAACTTGCGGATTCCCTAAGCTTGAGATCAAATCAGGAGATCCTAATTGAGGCTGTGGCGCTTGAAAAGTTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGGAGAAGCTGAGGACATTGATCAAATGATTGCTCTTGTAACCCGACTGCATGAACGACTTATTATGATAAAGCAATCCCAAAGTTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTTTCTCTCGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAGCGAGTATTTATTAAAAATTGGATTGATCAGGGACTCAATGTTTGCCCGAAGACTAGACAGACATTGGTTCACACGAATCTTATACCTAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGACACAAACAATGTGAAATTGTCTGATCCCTCAAAGTCAGTGAACTTAAACCAGCTTTCCCCCCTTCTGGTTGGGAGCTTTGAGTCTGATACCCCTCGAGAACCCCGTTTTCCTCATTCCCCTGGCTACCAACCGATGTCTCCTCAGACAACCAGGTCTGTGGGTTCAGGAAAGAACTTGAACTCACTTGGTGGAACCCATCGAGATGGAAGTTCTTCTTTGCTCTCCCACTCACTCTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAACGAGGGATTGATATTAGTAGACTGTTGCTTTCAAGTTCAGAAGATCAAACGGCCAAATTGGAAGAAAATGGTTGTGATTCGGTTGCTAAACCATCTACGTCACCATCTGGAACCAATGTTCCAAATACCAGTGGTGAGGATGAACCGTCTCATAGTCATAACAGGACTTCATCTACCTCTAGTGCAGTCTCAAATGCTAATCACTCCCGAGGAACTTCAGGGGAAACCAATGAAGCTACACATTTGTCAACCAATCTGACAGGTTATGGCAGTGATGCTGCTGTGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTACCTCGACTACCAACCACAGAGAACCAGAGCGAGAGCATCCACCAAGACTAGCTGACCCAAGATCTCGAGGTAATACGATGTGGCTCCGGCCATCAGAGAGGTTTGCCTCTAGAATAATTACATCATCTGTTAATGAGACAAGGCCGGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTAGAGGAATTAAAGAGCAGTTCACTTGACACTTTAAGAGGTGCCACAGCTGAATTGCGGTTGCTGGCTAAACATAATATGGATAACCGGATAGTGATTGCTCAATGTGGGGCGATTGAATATTTGGTTGATTTGCTCCTCTCTGCTGACTCGAAGATCCAGGAGAATGCTGTGACAGCACTTCTAAACTTATCCATCAATGATAATAACAAAAGTGCCATAGCTCAGGCTAATGCCATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGCCCAGAAGCGAAGGAGAACTCAGCAGCAACTCTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCCGGAGCAATAGGGCCCCTGGTTGAATTATTAGGCAATGGAACCCCAAGGGGAAAGAAGGATGCAGCTACAGCTCTGTTTAATTTGTCAATATTCCATGAGAACAAAGCTAGAATTGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCCACTATCCCCGAGGGTAGGTCTGCAATTGGCCAGGAAGGTGGAATCCCTGTTCTGGTTGAGGTTGTCGAGTTGGGTTCTGCGAGAGGAAAGGAAAATGCAGCAGCAGCATTGTTGCAGCTCTGCACTACAAGCAATAGGCATTGCAGTATGGTGCTTCAAGAAGGAGCCGTGCCACCATTGGTGGCATTGTCTCAATCTGGCACCGCTAGAGCCAAAGAAAAGGCCCAAGCACTTCTGAGCCATTTCAGAAGCCAGAGACATGGAAATTCAGGAAGAGGGACTTGCATAATTGATCCTTATTAG 2844 45.75 MESAFPSSSFSLYFTRRTRPTPNWPRPTSELHAAAAHFVLLNAAVILNFAPISASRRISAVARGGRRHWVSPSCRGFKDVWVTFRVLRRGFHNRKGIYFDSFWFKIEVRARAIEVIDRRLLYWHGDGLVMSFRITEVQWGYHYLKPILDAVVDSDIASDEELTQAFEDLDHSVDELRVLFENRQPLSSKVYFVLQTEALLSKIGKFSLDIFQLLQSSNENLPEELSSTSLEHCVQKIKHIGKEEISFVIKDAIRNQVDGIAPSSDVLVKLADSLSLRSNQEILIEAVALEKLKESAEQAENTGEAEDIDQMIALVTRLHERLIMIKQSQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERVFIKNWIDQGLNVCPKTRQTLVHTNLIPNYTVKALIANWCDTNNVKLSDPSKSVNLNQLSPLLVGSFESDTPREPRFPHSPGYQPMSPQTTRSVGSGKNLNSLGGTHRDGSSSLLSHSLSEDSLSNDAGDERGIDISRLLLSSSEDQTAKLEENGCDSVAKPSTSPSGTNVPNTSGEDEPSHSHNRTSSTSSAVSNANHSRGTSGETNEATHLSTNLTGYGSDAAVESKSEPLAAATSTTNHREPEREHPPRLADPRSRGNTMWLRPSERFASRIITSSVNETRPDLSAIEAQVQKVVEELKSSSLDTLRGATAELRLLAKHNMDNRIVIAQCGAIEYLVDLLLSADSKIQENAVTALLNLSINDNNKSAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRGTCIIDPY 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25413079 25422319 - CcPI632755_02g013440.1 Cco02g1344 172101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1344 947 Coils Coil 279 309 - -
Cco02g1344 947 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 779 821 IPR000225 GO:0005515(InterPro)
Cco02g1344 947 MobiDBLite consensus disorder prediction 428 493 - -
Cco02g1344 947 MobiDBLite consensus disorder prediction 514 626 - -
Cco02g1344 947 SUPERFAMILY ARM repeat 656 929 IPR016024 -
Cco02g1344 947 MobiDBLite consensus disorder prediction 521 541 - -
Cco02g1344 947 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 820 861 IPR000225 GO:0005515(InterPro)
Cco02g1344 947 MobiDBLite consensus disorder prediction 446 486 - -
Cco02g1344 947 Pfam U-box domain 336 406 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco02g1344 947 SMART Ubox_2 339 402 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco02g1344 947 Pfam Armadillo/beta-catenin-like repeat 688 725 IPR000225 GO:0005515(InterPro)
Cco02g1344 947 Pfam Armadillo/beta-catenin-like repeat 770 807 IPR000225 GO:0005515(InterPro)
Cco02g1344 947 Pfam Armadillo/beta-catenin-like repeat 727 766 IPR000225 GO:0005515(InterPro)
Cco02g1344 947 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 697 739 IPR000225 GO:0005515(InterPro)
Cco02g1344 947 FunFam RING-type E3 ubiquitin transferase 640 935 - -
Cco02g1344 947 SMART arm_5 727 767 IPR000225 GO:0005515(InterPro)
Cco02g1344 947 SMART arm_5 891 931 IPR000225 GO:0005515(InterPro)
Cco02g1344 947 SMART arm_5 849 889 IPR000225 GO:0005515(InterPro)
Cco02g1344 947 SMART arm_5 809 848 IPR000225 GO:0005515(InterPro)
Cco02g1344 947 SMART arm_5 686 726 IPR000225 GO:0005515(InterPro)
Cco02g1344 947 SMART arm_5 768 808 IPR000225 GO:0005515(InterPro)
Cco02g1344 947 MobiDBLite consensus disorder prediction 604 618 - -
Cco02g1344 947 CDD RING-Ubox_PUB 337 389 IPR045210 -
Cco02g1344 947 Gene3D - 639 937 IPR011989 -
Cco02g1344 947 SUPERFAMILY RING/U-box 325 412 - -
Cco02g1344 947 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 410 IPR013083 -
Cco02g1344 947 ProSiteProfiles U-box domain profile. 335 409 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco02g1344 947 FunFam RING-type E3 ubiquitin transferase 335 410 - -
Cco02g1344 947 MobiDBLite consensus disorder prediction 548 586 - -
Cco02g1344 947 PANTHER U BOX DOMAIN-CONTAINING 142 933 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1344 Cco-Chr2:25413079 Cco04g1481 Cco-Chr4:30245220 5.10E-34 dispersed
Cco09g0760 Cco-Chr9:6977610 Cco02g1344 Cco-Chr2:25413079 2.40E-69 transposed
Cco02g1344 Cco-Chr2:25413079 Cco04g1480 Cco-Chr4:30239826 3.70E-40 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1344 - - - 0.0