Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1360 ATGGATACCTTGTTCAGGTTGGTCAATGATCTTGAATCCTCTAATCAATATTCTTACAACAATTCTAGCAGCAGCTCAAAGAATTGTAGTGATCAAAATCATTATTACCATCTTCAAAAGCCACAATCTCAAGAATGCTTCAACAATTTGTTCATGGAGGAAGAAGACCATTTCTCTGCATCTTCTTCTTTAGATCATAATCATCACCACCAACTCCCACAGTTTCAATGTTCAACCACTGGGACTAGTACTACATCCACCGGTACTACAGCTTCAAGGGATGAGTGGTTCTCTTCCTTCACCGAAGAGTTGAACTTTGAATTCTCTGATGATTGGGCGTCCACGATACTCCTCCAAACAGCCATCGCCATTGTCGACAACAACACCAGTCGAATCCAACAACTCATGTGGATGTTGAATGAGCTCGGTTCTCCATATGGGGAAATTGATCAAAAGCTAGCATTCTACTTCCTTCAAGGCATGTTTAGTCGCGTCACCGACTCCGGTGCCAAGTGGTATGGGACGTTGGTAGCGGCGTCGGAGAAACGGTCGTGTTTTGAGTCGATGAGAAGAATGGTGCTGAAGTTTGAGGAGGTGAGTCCATGGATGACATTTGGTCATGTTGCTTCAAATGGTTGGATTATGGAAGCTTTACAAGGTGAAAAGAAGTTGCATATAATTGATATGGCCGGAAACTCCTCATTTTGCACTCAATGGCCCACTTTTATTGAAGCTCTCGCAACACAATCGGACCAGACTCCGCACCTTACCCTCACATTGTTGGTTGCAGCCAAATCCGACGGAACCATACGAGCCCATATGAAATTGGTGAAAGAAATAAGTAGAAGACTAGAGAAATTCGCAAGGCTTATGGGAGTTTCCTTCAAATTCAAACCCATTTTCCACTACGGCGACGTTTCACAGTTTGATTTTACACACTTAGGCATCAAACACGACGAGGCCCTCGCCGTCAACTGTGCCGGCGCCTTGCGCTCCGTCGTCCCCCTCCACAACGGCCGCGATTTTCTCATATCCTTGTTCCGATCTTTGCGTCCCAGGATTATCACCGTCGTAGAGGAGGAGGCCGATCTCGACCCCCACAACGACGTTGACTTTGTCAAACACATTCAGGAGTGTTTACGCTGGTTTAGGCTTTACTTTGATTCGTTGGACGGAAGTTTCCCGACCGCCACCGACGAGCAATTCATGCTTGAACGAGCCGCCGGACGCGCCGTCGTGGATTTGCTTGCACGCGTGCCGGCGGAGTCGGTGGAGAGGCGAGAGACCGCCGCGCGTTGGGCGCGTCGTTTGTATGACGGTGGCTTCAAACCGGTGTCGTTTAGCGAGGATGTAAATGACGATGTACGCGCGCTAGTGAGGAGGTACAAGGATGGGTGGACGATGACGGACGGGGATGGCTCCGGTGCCGGAATATTTTTGGCTTGGAAGGGGCAGCCGGTTGTTTGGGCCTCCGCGTGGGCTCCTGTAGAGCTAGACGGAGAGGAGACACATGTGTGA 1518 49.14 MDTLFRLVNDLESSNQYSYNNSSSSSKNCSDQNHYYHLQKPQSQECFNNLFMEEEDHFSASSSLDHNHHHQLPQFQCSTTGTSTTSTGTTASRDEWFSSFTEELNFEFSDDWASTILLQTAIAIVDNNTSRIQQLMWMLNELGSPYGEIDQKLAFYFLQGMFSRVTDSGAKWYGTLVAASEKRSCFESMRRMVLKFEEVSPWMTFGHVASNGWIMEALQGEKKLHIIDMAGNSSFCTQWPTFIEALATQSDQTPHLTLTLLVAAKSDGTIRAHMKLVKEISRRLEKFARLMGVSFKFKPIFHYGDVSQFDFTHLGIKHDEALAVNCAGALRSVVPLHNGRDFLISLFRSLRPRIITVVEEEADLDPHNDVDFVKHIQECLRWFRLYFDSLDGSFPTATDEQFMLERAAGRAVVDLLARVPAESVERRETAARWARRLYDGGFKPVSFSEDVNDDVRALVRRYKDGWTMTDGDGSGAGIFLAWKGQPVVWASAWAPVELDGEETHV 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25637267 25640720 - CcPI632755_02g013600.1 Cco02g1360 172117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1360 505 Pfam GRAS domain family 115 493 IPR005202 -
Cco02g1360 505 ProSiteProfiles GRAS family profile. 104 494 IPR005202 -
Cco02g1360 505 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 86 493 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0045930(PANTHER)|GO:0048366(PANTHER)|GO:0055072(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1360 Cco-Chr2:25637267 Cco04g1511 Cco-Chr4:30542929 4.00E-142 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58773 PF03514 GRAS 2.10E-87 CL0063 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1360 K27743 - csv:101210294 784.637