Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1369 ATGGACGACATCGACATTCTGAAATCGACACTCTCCCCATCCGACATGTCGTCGGCCACAATGTTCATGAACAATAACACGGCCAATTGCCCTCAAATCCCAGTCGTCCCACCGCCGTATTTCTCCGATTTCTCCCCGCCGGGCAGCTCCTTATTCCAAAGCCCAACAATAATCCCGGAGGCTCCGGCACGGCGGGGGCGGAGTGGGAGCGGCGGAGGAATGGCGGCGATGAGAGAGATGATATTCAGAATAGCGGCGATGCAACCAATAGAAATAGACCCGGAGGCAATAAAGGCGCCGAAGCGGCGGAACGTGAGAATCTCGAAGGATCCGCAGAGCGTGGCGGCGAGGCACCGGCGGGAGAGGATTAGCCAGAAAATTAGGATTCTGCAGCGGTTGGTGCCCGGCGGGACGAAGATGGACACGGCTTCGATGCTTGATGAGGCGGTGCATTATGTGAAGTTCTTGAAGAGGCAAGTCCAGACGTTGGAGCAGGCTGGATTTCATAATAATAATTTTAATTTCGTGAATTCTGCCAATTTAAATTACTCTTCTGCCCTTTTCAAGGCTTGCCAAATAATGCCTGCTTCCTTGCAAATGCATTCATGA 609 52.55 MDDIDILKSTLSPSDMSSATMFMNNNTANCPQIPVVPPPYFSDFSPPGSSLFQSPTIIPEAPARRGRSGSGGGMAAMREMIFRIAAMQPIEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNNNFNFVNSANLNYSSALFKACQIMPASLQMHS 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25832563 25833171 - CcPI632755_02g013690.1 Cco02g1369 172126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1369 202 FunFam BHLH transcription factor 110 174 - -
Cco02g1369 202 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 111 166 IPR036638 GO:0046983(InterPro)
Cco02g1369 202 Gene3D - 106 173 IPR036638 GO:0046983(InterPro)
Cco02g1369 202 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 107 156 IPR011598 GO:0046983(InterPro)
Cco02g1369 202 Pfam Helix-loop-helix DNA-binding domain 116 157 IPR011598 GO:0046983(InterPro)
Cco02g1369 202 CDD bHLH_AtIND_like 108 164 - -
Cco02g1369 202 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 72 185 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1369 202 SMART finulus 113 162 IPR011598 GO:0046983(InterPro)
Cco02g1369 202 Coils Coil 146 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1369 Cco-Chr2:25832563 Cco08g1786 Cco-Chr8:28991233 3.60E-38 dispersed
Cco02g1369 Cco-Chr2:25832563 Cco05g2262 Cco-Chr5:31350406 7.80E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58774 PF00010 HLH 7.00E-07 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1369 - - - 0.0