Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g1369 | ATGGACGACATCGACATTCTGAAATCGACACTCTCCCCATCCGACATGTCGTCGGCCACAATGTTCATGAACAATAACACGGCCAATTGCCCTCAAATCCCAGTCGTCCCACCGCCGTATTTCTCCGATTTCTCCCCGCCGGGCAGCTCCTTATTCCAAAGCCCAACAATAATCCCGGAGGCTCCGGCACGGCGGGGGCGGAGTGGGAGCGGCGGAGGAATGGCGGCGATGAGAGAGATGATATTCAGAATAGCGGCGATGCAACCAATAGAAATAGACCCGGAGGCAATAAAGGCGCCGAAGCGGCGGAACGTGAGAATCTCGAAGGATCCGCAGAGCGTGGCGGCGAGGCACCGGCGGGAGAGGATTAGCCAGAAAATTAGGATTCTGCAGCGGTTGGTGCCCGGCGGGACGAAGATGGACACGGCTTCGATGCTTGATGAGGCGGTGCATTATGTGAAGTTCTTGAAGAGGCAAGTCCAGACGTTGGAGCAGGCTGGATTTCATAATAATAATTTTAATTTCGTGAATTCTGCCAATTTAAATTACTCTTCTGCCCTTTTCAAGGCTTGCCAAATAATGCCTGCTTCCTTGCAAATGCATTCATGA | 609 | 52.55 | MDDIDILKSTLSPSDMSSATMFMNNNTANCPQIPVVPPPYFSDFSPPGSSLFQSPTIIPEAPARRGRSGSGGGMAAMREMIFRIAAMQPIEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNNNFNFVNSANLNYSSALFKACQIMPASLQMHS | 202 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 25832563 | 25833171 | - | CcPI632755_02g013690.1 | Cco02g1369 | 172126 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g1369 | 202 | FunFam | BHLH transcription factor | 110 | 174 | - | - | |
Cco02g1369 | 202 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 111 | 166 | IPR036638 | GO:0046983(InterPro) | |
Cco02g1369 | 202 | Gene3D | - | 106 | 173 | IPR036638 | GO:0046983(InterPro) | |
Cco02g1369 | 202 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 107 | 156 | IPR011598 | GO:0046983(InterPro) | |
Cco02g1369 | 202 | Pfam | Helix-loop-helix DNA-binding domain | 116 | 157 | IPR011598 | GO:0046983(InterPro) | |
Cco02g1369 | 202 | CDD | bHLH_AtIND_like | 108 | 164 | - | - | |
Cco02g1369 | 202 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 72 | 185 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g1369 | 202 | SMART | finulus | 113 | 162 | IPR011598 | GO:0046983(InterPro) | |
Cco02g1369 | 202 | Coils | Coil | 146 | 166 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1369 | Cco-Chr2:25832563 | Cco08g1786 | Cco-Chr8:28991233 | 3.60E-38 | dispersed | |
Cco02g1369 | Cco-Chr2:25832563 | Cco05g2262 | Cco-Chr5:31350406 | 7.80E-41 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58774 | PF00010 | HLH | 7.00E-07 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g1369 | - | - | - | 0.0 |